Pairwise Alignments

Query, 334 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 354 a.a., HlyD family secretion protein (RefSeq) from Shewanella amazonensis SB2B

 Score = 94.7 bits (234), Expect = 3e-24
 Identities = 79/331 (23%), Positives = 149/331 (45%), Gaps = 26/331 (7%)

Query: 3   ALSWSIALVLASSAYAQNQDSNERFTVKTEL-------ISQIVELDGVVQPVNQGSLAAQ 55
           AL   +  VLA+    + +   E++ +  E        +S        ++   +  +  +
Sbjct: 10  ALPLLLVGVLAACGQEEAKKEEEKYAIPVETQLVVQGNVSSFYSTTATLEAPVEAHVVTR 69

Query: 56  TSGRVVGLYVDVNDFVKKDQVLLEISAVQQSAALDAAQAQLASATAQNREAQAQLNRYRQ 115
            +G +  L+V+  D VK+ Q+L  I A +Q   LD ++A++          + +L R ++
Sbjct: 70  IAGLIEALHVEEGDRVKQGQLLAVIDAKRQQYELDRSEAEVLII-------EQELARVKK 122

Query: 116 LFPKGAISKDQMDSAEARARSADAAVKSAQAAVEQAKESLGYTNITAPYDGIVTQRMVEL 175
           +  K  +S D +   E   ++A A +  A+  V++++       I +P DGI+ +R V+ 
Sbjct: 123 MKSKDYVSADSIAKLEYNLQAAKARLDLAKLQVKESQ-------IVSPVDGIIAKRFVKA 175

Query: 176 GETVAPGTPLLRGFSLDELRVETEIPQRYQPYVADVSQFTVRTAQGEQLKPVEFSLFSYA 235
           G        L    + DEL     +P++ Q     + Q     A G++ + V   +   +
Sbjct: 176 GNMAKEFEELFYVVNQDELHGIVHLPEQ-QLSSLRLGQHADIYASGQKNQAVNAEVLRIS 234

Query: 236 ---DPQSHTFKTRLELPQNSAALVPGMWVKTEFNYGQRE-VLVVPSSAVLRRAELSAVYR 291
              D QS TFK  L++P  +  L  GM+ + E  Y   E V+ VP +A++ +     +Y 
Sbjct: 235 PVVDAQSGTFKVTLKVPNQNGILKSGMFTRVELKYDTHENVITVPYNAIINQDNKQTLYV 294

Query: 292 VNNGQRALNPVRLGQVYGDYVEVLSGLELGD 322
           V +       V LG   G+ VEV++G+  G+
Sbjct: 295 VQDTTAERREVELGYREGNMVEVVAGIAPGE 325