Pairwise Alignments

Query, 334 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 426 a.a., Secretion protein HlyD (NCBI) from Rhodospirillum rubrum S1H

 Score = 95.5 bits (236), Expect = 2e-24
 Identities = 85/304 (27%), Positives = 135/304 (44%), Gaps = 23/304 (7%)

Query: 40  LDGVVQPVNQGSLAAQTSGRVVGLYVDVNDFVKKDQVLLEISAVQQSAALDAAQAQLASA 99
           L G         +  Q +G ++    +    V + Q L +I      AALD+A+AQLA A
Sbjct: 84  LPGRTVAYRSAEVRPQVNGIILKRLFEEGTEVTEGQQLYQIDPATYKAALDSAKAQLAKA 143

Query: 100 TAQNREAQAQLNRYRQLFPKGAISKDQMDSAEARARSADAAVKSAQAAVEQAKESLGYTN 159
            A  + A+A+  RY +L    A+S+   D   A    + A+V  AQA V+ A+ +L YT 
Sbjct: 144 DATVKSARAKAARYGELVKLKAVSRQDYDDVTATLAESVASVADAQATVDAAEINLAYTR 203

Query: 160 ITAPYDGIVTQRMVELGE--TVAPGTPLLRGFSLDELRVETEIPQRYQPYVADVSQFTVR 217
           +TAP  G + +  V  G   T    T L     LD + V  ++ Q     +   +Q    
Sbjct: 204 VTAPISGRIGRSAVTEGALVTANQATTLATITQLDPINV--DLTQSSDKLLKLRAQMANG 261

Query: 218 TAQGEQLKPVEFSL--------------FS--YADPQSHTFKTRLELPQNSAALVPGMWV 261
           T Q  +  PV   +              FS    D  + T + R   P  +  L+PG++V
Sbjct: 262 TVQAPERVPVTLQIDNSGTPYGLTGTLQFSEVVVDETTGTVRLRATFPNPNRILLPGLFV 321

Query: 262 KTEFNYGQRE-VLVVPSSAVLRRAE-LSAVYRVNNGQRA-LNPVRLGQVYGDYVEVLSGL 318
           +   ++G RE V ++P  AV+R A   +A++ + +G +A   PV      G    V  GL
Sbjct: 322 RATVDFGSRENVFLIPQRAVVRDASGKAALWVIGDGDKAERRPVTAETTQGTNWVVTEGL 381

Query: 319 ELGD 322
           + G+
Sbjct: 382 KGGE 385