Pairwise Alignments

Query, 334 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 356 a.a., triclosan efflux RND transporter adaptor protein TriB from Pseudomonas aeruginosa PA14

 Score =  112 bits (279), Expect = 2e-29
 Identities = 85/308 (27%), Positives = 140/308 (45%), Gaps = 4/308 (1%)

Query: 28  TVKTELISQIVELDGVVQPVNQGSLAAQTSGRVVGLYVDVNDFVKKDQVLLEISAVQQSA 87
           TVKT     +    G +Q   +  L  +T+GR+     DV DFV K  +L  +    Q  
Sbjct: 35  TVKTLKNDDLGRFAGSIQARYESVLGFRTNGRIASRLFDVGDFVGKGALLATLDPTDQQN 94

Query: 88  ALDAAQAQLASATAQNREAQAQLNRYRQLFPKGAISKDQMDSAEARARSADAAVKSAQAA 147
            L A+Q  LASA AQ  +AQA   R  +LF +   ++ ++D A  R +++ A+   A+AA
Sbjct: 95  QLRASQGDLASAEAQLIDAQANARRQEELFARSVTAQARLDDARTRLKTSQASFDQAKAA 154

Query: 148 VEQAKESLGYTNITAPYDGIVTQRMVELGETVAPGTPLLRGFSLDELRVETEIPQRYQPY 207
           V+QA++ L YT +   +DG++T    E G+ V+ G  ++     +      ++P      
Sbjct: 155 VQQARDQLSYTRLVTDFDGVITTWHAEAGQVVSAGQAVVTLARPEVREAVFDLPTEVAES 214

Query: 208 VADVSQFTVRTAQGEQLKPVEF--SLFSYADPQSHTFKTRLELPQNSAALVPGMWVKTEF 265
           +   ++F V      Q +       L   AD  + T + RL L Q   A   G  ++ + 
Sbjct: 215 LPADARFLVSAQLDPQARTTGSIRELGPQADASTRTRRVRLSLAQTPEAFRLGSTIQVQL 274

Query: 266 NYGQREVLVVPSSAVLRRAELSAVYRVNNGQR--ALNPVRLGQVYGDYVEVLSGLELGDV 323
           +       V+P+S +L R   + V+ V+  Q   AL  V++       V +  GL  GD 
Sbjct: 275 SSAGSVRSVLPASVLLERDGKTQVWVVDGKQSSVALREVQVLSRDERQVVIGQGLADGDR 334

Query: 324 VATQAVTA 331
           V    V +
Sbjct: 335 VVRAGVNS 342