Pairwise Alignments

Query, 334 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 338 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella loihica PV-4

 Score =  266 bits (680), Expect = 5e-76
 Identities = 144/322 (44%), Positives = 198/322 (61%)

Query: 7   SIALVLASSAYAQNQDSNERFTVKTELISQIVELDGVVQPVNQGSLAAQTSGRVVGLYVD 66
           SI ++L+  +           TV      Q + LD  ++ V   +++AQTSGR++ +  D
Sbjct: 8   SIGILLSLVSLVSGASELPTMTVAKHSQPQWITLDAQLEAVKSATVSAQTSGRIIKINYD 67

Query: 67  VNDFVKKDQVLLEISAVQQSAALDAAQAQLASATAQNREAQAQLNRYRQLFPKGAISKDQ 126
           VND V +   LLEI++  Q A L AA+A  A A AQN EAQ Q  RY QLFP+GAIS+  
Sbjct: 68  VNDIVPQGASLLEITSKAQGAELAAAEADFARAQAQNEEAQKQRKRYEQLFPQGAISQGD 127

Query: 127 MDSAEARARSADAAVKSAQAAVEQAKESLGYTNITAPYDGIVTQRMVELGETVAPGTPLL 186
           MD A A AR++  AV +A+A + QA ESL YT ++AP+ G+VT+R VE+GETV+PG  LL
Sbjct: 128 MDQAIANARASAQAVSAARARIIQANESLQYTTVSAPFAGVVTKRHVEVGETVSPGQALL 187

Query: 187 RGFSLDELRVETEIPQRYQPYVADVSQFTVRTAQGEQLKPVEFSLFSYADPQSHTFKTRL 246
            GF+ + +R  T +P RY   +    +  +    G++L+    ++FS+AD +SH++KTR+
Sbjct: 188 SGFATEHMRAVTHVPLRYIDALRANPKMKLVLTNGKELESDALTIFSFADAKSHSYKTRI 247

Query: 247 ELPQNSAALVPGMWVKTEFNYGQREVLVVPSSAVLRRAELSAVYRVNNGQRALNPVRLGQ 306
           +LP     L+PGMWVK  FN G R  L +P SAV+   ELSAVY + N Q  LN VRLG 
Sbjct: 248 DLPPQEPNLMPGMWVKASFNAGDRNTLTIPESAVIYNNELSAVYLMQNNQFMLNQVRLGN 307

Query: 307 VYGDYVEVLSGLELGDVVATQA 328
             GD  EVLSGL  GD +A  A
Sbjct: 308 KQGDSFEVLSGLSDGDTIAVDA 329