Pairwise Alignments

Query, 334 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 354 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella loihica PV-4

 Score = 96.7 bits (239), Expect = 8e-25
 Identities = 84/332 (25%), Positives = 140/332 (42%), Gaps = 24/332 (7%)

Query: 3   ALSWSIALVLASSAYAQNQDSNERFTVKTEL-------ISQIVELDGVVQPVNQGSLAAQ 55
           AL      VL++    + +   E++ V  E        +S        ++   +  + ++
Sbjct: 10  ALPLLFVAVLSACGNEETKKEEEKYAVPVETTTVIQGDVSSFYSTTATLEAPQEADVVSR 69

Query: 56  TSGRVVGLYVDVNDFVKKDQVLLEISAVQQSAALDAAQAQLASATAQNREAQAQLNRYRQ 115
            +G +  + V+  D V K Q+L  I A +Q   L  +QA++          + +LNR ++
Sbjct: 70  IAGLIESIKVEEGDRVSKGQLLAVIDAKRQRYDLARSQAEVEII-------EQELNRLKK 122

Query: 116 LFPKGAISKDQMDSAEARARSADAAVKSAQAAVEQAKESLGYTNITAPYDGIVTQRMVEL 175
           +  K  IS D M   E   +   AA+     A  Q +ES+    + +P DG+V +R V+ 
Sbjct: 123 MSNKEFISADSMAKLEYNLQ---AAIAKRDLAALQVQESM----VRSPIDGVVAKRYVKA 175

Query: 176 GETVAPGTPLLRGFSLDELRVETEIP--QRYQPYVADVSQFTVRTAQGEQLKPVEFSLFS 233
           G        L    + DEL     +P  Q     +   ++        + +      +  
Sbjct: 176 GNMAKEFEQLFYVVNQDELYGIVHLPEAQLQSLRLGQEAELYANKHTKDTIHAKVLRISP 235

Query: 234 YADPQSHTFKTRLELPQNSAALVPGMWVKTEFNYG-QREVLVVPSSAVLRRAELSAVYRV 292
             DPQS TFK  L +P  +A L  GM+ + E  Y     V+ VP +AV+ +    A+Y V
Sbjct: 236 IVDPQSGTFKVTLSVPNQNAQLKAGMFTRVELRYDTHSNVITVPYNAVVNQDNQYALYVV 295

Query: 293 NNGQRALNPVRLGQVYGDYVEVLSGLELGDVV 324
                    V LG    D VEV+SGLE G+ +
Sbjct: 296 QGDNALRREVALGYREADTVEVVSGLEPGEQI 327