Pairwise Alignments

Query, 334 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 417 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella loihica PV-4

 Score = 95.9 bits (237), Expect = 2e-24
 Identities = 80/309 (25%), Positives = 141/309 (45%), Gaps = 27/309 (8%)

Query: 29  VKTELISQIVELDGVVQPVNQGSLAAQTSGRVVGLYVDVNDFVKKDQVLLEISAVQQSAA 88
           V+   ++Q + L G +       +AA+ SG+V  + +  N  V + QVL+ +   +    
Sbjct: 71  VEAHEVAQHLSLVGKLAANRSVQIAAEVSGKVQAINLSDNQAVSQGQVLVHLEDAK---- 126

Query: 89  LDAAQAQLASATAQNREAQAQLNRYRQLFPKGAISKDQMDSAEARARSADAAVKSAQAAV 148
              A+A LA A A   + + +L  Y++L  + AI++ ++D+  A    A+A +++AQA  
Sbjct: 127 ---AKANLAEAKAYLNDERRKLGEYKRLIKQHAITQTEIDAQLASVDIAEARLQAAQA-- 181

Query: 149 EQAKESLGYTNITAPYDGIVTQRMVELGETVAPGTPLLRGFSLDELRVETEIPQRY---- 204
                 L Y  + AP+DG++      LG+ V+ G+ L+    L  +R++ +IP+RY    
Sbjct: 182 -----DLDYHTLKAPFDGVIGLVDFSLGKLVSVGSELVSLDDLSSMRLDLQIPERYLSQI 236

Query: 205 ---QPYVADVSQFTVRTAQGEQLKPVEFSLFSYADPQSHTFKTRLELPQNSAALVPGMWV 261
               P VA  S +      GEQ      ++    + ++   K R+     S  L PGM +
Sbjct: 237 YLGMPVVASSSAW-----PGEQFHGQVVAMAPRINSETLNLKVRVNFDNPSLQLRPGMLI 291

Query: 262 KTEFNYGQREVLVVPSSAVLRRAELSAVYRVNNGQRA-LNPVRLGQVYGDYVEVLSGLEL 320
               ++      VVP  A+        VY +++   A    V LG    D V +  GL L
Sbjct: 292 SARLDFAPVTQAVVPVQALEYSGTKRFVYVIDSDNIARRTQVTLGARIDDQVLIDDGLSL 351

Query: 321 GDVVATQAV 329
           GD +  + +
Sbjct: 352 GDRIVVKGL 360