Pairwise Alignments

Query, 334 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 359 a.a., RND family efflux transporter, MFP subunit from Dechlorosoma suillum PS

 Score =  144 bits (362), Expect = 4e-39
 Identities = 111/335 (33%), Positives = 169/335 (50%), Gaps = 25/335 (7%)

Query: 3   ALSWSIALVLASSAYAQNQDSNERFTVKTELISQIVELDGVVQPVNQGSLAAQTSGRVVG 62
           ALS ++  V+A+ A      +     V+   ++  +  +GVV+ ++Q  +AAQ +GRV  
Sbjct: 30  ALSLAVGSVVAAEASPSELPTR---VVQPREVALTLPAEGVVEALSQAVVAAQVAGRVTE 86

Query: 63  LYVDVNDFVKKDQVLLEISAVQQSAALDAAQAQLASATAQNREAQAQLNRYRQLFPKGAI 122
           + VD    VKK +V+L +   + +     AQA L +       A+AQ  R R L  +  I
Sbjct: 87  MRVDAGQAVKKGEVMLRLDVREAAETAAGAQAALVN-------ARAQYERSRSLRQQNFI 139

Query: 123 SKDQMDSAEARARSADAAVKSAQAAVEQAKESLGYTNITAPYDGIVTQRMVELGETVAPG 182
           S+  +D A+     AD  +  A A    A +S G   ITAP  G+V +R +ELGE  A G
Sbjct: 140 SQSALDKAK-----ADLDLAMANAGASGASQSHG--TITAPISGLVARRHIELGEMAAQG 192

Query: 183 TPLLRGFSLDELRVETEIPQRYQPYVADVSQFTVRTAQGE---QLKPVEFSLFSYADPQS 239
             L+  +    LRV  EIPQ     +        R    E   Q+   + ++   AD  +
Sbjct: 193 RSLVTLYDPAGLRVTVEIPQYRLKELKGGKDLQGRIEFPELQRQVAAAKVTVLPAADAAT 252

Query: 240 HTFKTRLELPQNSAAL---VPGMWVKTEFNYGQREVLVVPSSAVLRRAELSAVY-RVNNG 295
           HT + RL LP ++A+L   +PGM  +  F  G+   L VP+SAV+RR E++ +Y R   G
Sbjct: 253 HTVQVRLNLPGDAASLQDVLPGMAARVHFVLGRAVKLTVPASAVVRRGEVAGLYVRDGQG 312

Query: 296 QRALNPVRLGQVYGD-YVEVLSGLELGDVVATQAV 329
           + +L  +RLGQ  GD  VEVL+GL  G+ +    V
Sbjct: 313 RLSLRQLRLGQAVGDGEVEVLAGLSAGETIVLDPV 347