Pairwise Alignments

Query, 334 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 418 a.a., RND family efflux transporter, MFP subunit from Dechlorosoma suillum PS

 Score =  106 bits (265), Expect = 9e-28
 Identities = 90/309 (29%), Positives = 151/309 (48%), Gaps = 31/309 (10%)

Query: 9   ALVLASSAYAQNQDSN-----ERFTVKT---ELISQIVELDGVVQPVNQGSLAAQTSGRV 60
           AL+LA   Y   Q        +R+ ++T     ++Q V  +G + PV   ++  Q SG V
Sbjct: 15  ALLLAGGGYVAYQKLTAPGLEQRYKLQTLEKGELTQSVSANGTLNPVTLVNVGTQVSGTV 74

Query: 61  VGLYVDVNDFVKKDQVLLEISAVQQSAALDAAQAQLASATAQNREAQAQLNRYRQLFPKG 120
             LYVD ND VK+ Q+L E+     SA +  + A +ASA A    A A   R + LF + 
Sbjct: 75  KKLYVDFNDQVKQGQILAELDDSLYSAQVHQSDANIASARASLDLAIASEERMKSLFAQE 134

Query: 121 AISKDQMDSAEARARSADAAVKSAQAAVEQAKESLGYTNITAPYDGIVTQRMVELGETVA 180
            +S+ ++D A    RSA A +   +AA ++ + +LGY+ I +P  G+V  R +++G+TVA
Sbjct: 135 YVSRQELDQAVQARRSAQAQLNQYKAANDKDRANLGYSVIRSPVSGVVVDRQIDVGQTVA 194

Query: 181 PG--TPLLRGFSLD--ELRVETEIPQR-------YQPYVADVSQFTVRTAQGEQLKPVEF 229
               TP L   + D   +++ T   +         QP   +V  F  R  +GE +K V  
Sbjct: 195 ASFQTPTLFKIAQDLTAMQIYTSFAEADIGNIKVGQPVKFNVDAFPNRQFKGE-VKQVRL 253

Query: 230 SLFSYADPQSHTFKTRLELPQNSAALVPGMWVKTEFNYGQR-EVLVVPSSAVLRRAELSA 288
           +  +  +  ++     ++ P+    L+PGM         +R +VL+VP++A+        
Sbjct: 254 NPTTQQNVVTYNVVVVVDNPEQ--ILLPGMTAYVNIAVAKRSDVLLVPNAALR------- 304

Query: 289 VYRVNNGQR 297
            Y+ N GQ+
Sbjct: 305 -YKPNGGQK 312