Pairwise Alignments

Query, 334 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 364 a.a., efflux transporter, RND family, MFP subunit from Marinobacter adhaerens HP15

 Score = 92.8 bits (229), Expect = 1e-23
 Identities = 92/345 (26%), Positives = 145/345 (42%), Gaps = 45/345 (13%)

Query: 6   WSIALVLASSAYA-----QN-------QDSNER-------FTVKTELISQIVELDGVVQP 46
           W IALVL + A       QN       Q   ER          + E +  +V   G ++ 
Sbjct: 5   WLIALVLVAVAIGGAFVYQNFDDGTAAQSGRERPASAVNTMLPQMEAVRDVVNAVGSLKA 64

Query: 47  VNQGSLAAQTSGRVVGLYVDVNDFVKKDQVLLEISAVQQSAALDAAQAQLASATAQNREA 106
           +N   L  + SGRVV L ++    V +  VLL +   Q  A L   +AQLA       +A
Sbjct: 65  LNAVELTTEVSGRVVELNLETGRRVGQGDVLLRLDDRQAWADLQVIEAQLA-------DA 117

Query: 107 QAQLNRYRQLFPKGAISKDQMDSAEARARSADAAVKSAQAAVEQAKESLGYTNITAPYDG 166
           + QL R ++L    +IS+ Q+D        A+A  +SAQ  +E  +       I AP+ G
Sbjct: 118 RRQLERAQRLRSNNSISQSQVDQLRTSVDVAEAQRQSAQVRLENHR-------IEAPFAG 170

Query: 167 IVTQRMVELGETVAPGTPLLRGFSLDELRVETEIPQRYQPYVADVSQ-------FTVRTA 219
           +V    + +G  +  GT +    + D + +   IP+R+   V+   +       +  +T 
Sbjct: 171 VVGLSDISVGAYITAGTSVTTLDTTDRMELGFSIPERFLGQVSLGQEVRGASPAYPDQTF 230

Query: 220 QGEQLKPVEFSLFSYADPQSHTFKTRLELPQNSAALVPGMWVKTEFNYGQREVLVVPSSA 279
            G+ ++     L S     S +   R  +      L PG ++       QR+ LV+P  A
Sbjct: 231 SGQLVE-----LGSRVSELSRSLPVRALIDNPDGLLRPGQFMSATLTLRQRQALVIPEQA 285

Query: 280 VLRRAELSAVYRVNNGQRALNPVRLGQVYGDYVEVLSGLELGDVV 324
           V+ R +   V+   +G      V LG     +VEV SGL   D V
Sbjct: 286 VMIRGDEQYVFVAEDGVARRVSVSLGSRMPGFVEVSSGLSQEDPV 330