Pairwise Alignments

Query, 334 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 382 a.a., multidrug resistance protein, AcrA/AcrE family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 99.8 bits (247), Expect = 1e-25
 Identities = 94/327 (28%), Positives = 144/327 (44%), Gaps = 20/327 (6%)

Query: 23  SNERFTVKTELISQIV--ELDGVVQPVNQGSLAAQTSGRVVGLYVDVNDFVKKDQVLLEI 80
           S E   +K E   Q++  EL G  +   +  +  Q +G +          VK+ + L +I
Sbjct: 36  SMEVGVIKVEAKPQVIKIELPGRSKAFLEAEVRPQVNGIITKRSFVEGGNVKQGESLYQI 95

Query: 81  SAVQQSAALDAAQAQLASATAQNREAQAQLNRYRQLFPKGAISKDQMDSAEARARSADAA 140
            +    AAL +A A LA A A    A+A+  RY+QL    AISK   D A+A  + A A+
Sbjct: 96  DSATYKAALVSANADLARANASLASAKAKAARYQQLVKTNAISKQDFDEADAAYKEALAS 155

Query: 141 VKSAQAAVEQAKESLGYTNITAPYDGIVTQRMVELGE--TVAPGTPLLRGFSLDELRVE- 197
           V  A+AA+  AK +L YT + AP  G + +  V  G   T      L     LD + V+ 
Sbjct: 156 VTVAEAAINTAKINLEYTEVLAPISGRIGKSSVTAGALVTANQSQTLATIQQLDPINVDI 215

Query: 198 TEIPQRYQPYVADVSQFTVRTAQGE--QLKPVEFSLFSY----------ADPQSHTFKTR 245
            +   +     A + Q  +  A     QL  V+ +++ +           D  + +   R
Sbjct: 216 AQSSAQLLRLKAKLKQGKLLAADNADVQLVLVDGTVYGHTGKLQFAEVSVDQNTGSVILR 275

Query: 246 LELPQNSAALVPGMWVKTEFNYG-QREVLVVPSSAVLRRAELSAVYRVNN--GQRALNPV 302
            E P     L+PGM+V+   N G   + ++VP  A+ R A+  AV  V N  GQ     V
Sbjct: 276 AEFPNPDGVLLPGMYVRAMLNAGTDPQAILVPQKAITRNAKGEAVAMVVNAQGQVEAKIV 335

Query: 303 RLGQVYGDYVEVLSGLELGDVVATQAV 329
              +V      V SGL +GD V  + +
Sbjct: 336 TTAEVINHQWRVTSGLAVGDQVIVEGL 362