Pairwise Alignments

Query, 334 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 354 a.a., HlyD family secretion protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  102 bits (254), Expect = 1e-26
 Identities = 86/335 (25%), Positives = 150/335 (44%), Gaps = 24/335 (7%)

Query: 3   ALSWSIALVLASSAYAQNQDSNERFTVKTEL-------ISQIVELDGVVQPVNQGSLAAQ 55
           AL   +  +LA+    +     E++ +  E        +S        ++   + ++ ++
Sbjct: 10  ALPVLLVSMLAACGEEEVAKKEEKYAIPVETTTVIQGNVSSFYSTTATLEAPQEANVVSR 69

Query: 56  TSGRVVGLYVDVNDFVKKDQVLLEISAVQQSAALDAAQAQLASATAQNREAQAQLNRYRQ 115
            +G +  + V+  D VKK Q L  I A +Q   LD ++A++       +  + +LNR ++
Sbjct: 70  IAGLIEVINVEEGDRVKKGQSLAIIDAKRQQYDLDRSEAEV-------KIIEQELNRLKK 122

Query: 116 LFPKGAISKDQMDSAEARARSADAAVKSAQAAVEQAKESLGYTNITAPYDGIVTQRMVEL 175
           +  K  IS D M   E   +   AA+     A  Q KES    ++ +P DGI+ +R V+ 
Sbjct: 123 MNNKEFISADSMAKLEYNLQ---AAIARRDLAELQVKES----HVVSPIDGIIAKRYVKA 175

Query: 176 GETVAPGTPLLRGFSLDELRVETEIPQRYQPYVADVSQFTVRTAQGEQ--LKPVEFSLFS 233
           G        L    + DEL     +P++    +    +  V + Q  +  +      +  
Sbjct: 176 GNMAKEFGDLFYIVNQDELHGIVHLPEQQLTSLRLGQEAQVFSNQQSKNAINAKVLRISP 235

Query: 234 YADPQSHTFKTRLELPQNSAALVPGMWVKTEFNYGQRE-VLVVPSSAVLRRAELSAVYRV 292
             DPQS TFK  L +P   A L  GM+ + E  Y   E V+ VP SA++ +    A+Y +
Sbjct: 236 VVDPQSGTFKVTLAVPNQDARLKAGMFTRVELKYDTHENVITVPYSALINQDNKQALYVI 295

Query: 293 NNGQRALNPVRLGQVYGDYVEVLSGLELGDVVATQ 327
                    V +G   GD VE++SG++ G+VV T+
Sbjct: 296 AGTNANRREVEIGYREGDAVEIVSGIKPGEVVVTR 330