Pairwise Alignments

Query, 334 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 394 a.a., efflux transporter, RND family, MFP subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 93.6 bits (231), Expect = 7e-24
 Identities = 85/310 (27%), Positives = 138/310 (44%), Gaps = 37/310 (11%)

Query: 50  GSLAAQTSGRVVGL-----YVDVNDFVKKDQVLLEISAVQQSAALDAAQAQLASATAQNR 104
           GS   +   RV G+     Y +    +KK  ++ EI      AALD A+ QLA   A+  
Sbjct: 63  GSREVEVRARVTGILLKRTYTEGRP-IKKGALMFEIDPDTYKAALDQAEGQLAQEQARLS 121

Query: 105 EAQAQLNRYRQLFPKGAISKDQMDSAEARARSADAAVKSAQAAVEQAKESLGYTNITAPY 164
            A+ + +R   L+   A+S+   D A     SA AAVK AQA V++A+ +LGYT + AP 
Sbjct: 122 RARLERDRVLALYADNAVSQKDRDDAVTEFDSASAAVKVAQARVKEARINLGYTRVDAPI 181

Query: 165 DGIVTQRMVELGETVAP---GTPLLRGFSLDELRVETEIPQRYQPYVADVSQFTVRTAQG 221
            G+ ++ +   G  V+P   G+ L     LD L V   +P        ++S        G
Sbjct: 182 AGVTSKEVRSEGSLVSPSADGSLLTTITRLDPLYVNFGVPG------TEMSSLRRLIESG 235

Query: 222 EQLKP-----VEFSL-----------FSYADPQ----SHTFKTRLELPQNSAALVPGMWV 261
           +   P     V+ +L            ++ D Q    + T ++R E P   A ++PG +V
Sbjct: 236 KAEMPADGLAVQLTLPDGTVYARTGKITFTDKQVDQTTGTVRSRAEFPNPEAEVMPGQFV 295

Query: 262 KTE-FNYGQREVLVVPSSAVLRRAELSAVYRVNNGQRA-LNPVRLGQVYGDYVEVLSGLE 319
           + +      +  ++VP  AVL   +   VY V +   A L PV + +  G    +  GL 
Sbjct: 296 RAKVLGLVLKNAIIVPQRAVLETQKGPMVYVVGSDMVANLRPVVVAEALGGDYLIEKGLS 355

Query: 320 LGDVVATQAV 329
            G+ +  + +
Sbjct: 356 GGETIIVEGI 365