Pairwise Alignments

Query, 334 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 389 a.a., efflux transporter, RND family, MFP subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 92.8 bits (229), Expect = 1e-23
 Identities = 82/313 (26%), Positives = 136/313 (43%), Gaps = 17/313 (5%)

Query: 34  ISQIVELDGVVQPVNQGSLAAQTSGRVVGLYVDVNDFVKKDQVLLEISAVQQSAALDAAQ 93
           +++ +E  G +  V    + A+ +G +          V K   L  I      AAL  A+
Sbjct: 51  VTEYMEFSGTIAAVESVDITARVTGTLRSAQFRDGSTVHKGDPLFIIEPEPYQAALQRAE 110

Query: 94  AQLASATAQNREAQAQLNRYRQLFPKGAISKDQMDSAEARARSADAAVKSAQAAVEQAKE 153
           A+L    A    A+ +L R R+L  + A S+  +   + +  SA A +  A+A +E A+ 
Sbjct: 111 AELEVQQAALARAETELARSRKLLTEKAGSETDVVKWQQQRDSAKANISRAKAQIETARI 170

Query: 154 SLGYTNITAPYDGIVTQRMVELGETVAPG-----TPLLRG------FSLDELRVETEIPQ 202
            LGYT ITAP+DG +++R  + G  V PG       ++R       F+++E  +   + +
Sbjct: 171 DLGYTRITAPFDGQISRRFADPGNVVGPGAVTRLATIVRRDQVHVYFNINERDLLRLMAE 230

Query: 203 RYQPYVADVSQFTVRTAQGEQLKPVEFSLFSYA----DPQSHTFKTRLELPQNSAALVPG 258
           R +P  A      +  A  ++          YA    DP + T + R   P  S  L+PG
Sbjct: 231 RPKPKTASAPTMPLELALADEDGFPHAGKLDYADPGVDPATGTMQLRGLFPNPSGRLLPG 290

Query: 259 MWVKTEFNYGQRE-VLVVPSSAVLRRAELSAVYRVNNGQRA-LNPVRLGQVYGDYVEVLS 316
           ++ +     GQ +  ++VP  A+ +    S V  VN    A    V LG ++  Y  V  
Sbjct: 291 LFARIRVAVGQSDKAMMVPDRAIGQDQSGSYVIIVNAQNIAEQRAVVLGPLHEGYRVVSK 350

Query: 317 GLELGDVVATQAV 329
           GL   D V    +
Sbjct: 351 GLSAEDRVVVNGI 363