Pairwise Alignments

Query, 334 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 382 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella sp. ANA-3

 Score = 99.8 bits (247), Expect = 1e-25
 Identities = 90/311 (28%), Positives = 138/311 (44%), Gaps = 20/311 (6%)

Query: 38  VELDGVVQPVNQGSLAAQTSGRVVGLYVDVNDFVKKDQVLLEISAVQQSAALDAAQAQLA 97
           VEL G  +   +  +  Q SG V          VK+ + L +I +    AAL +A A LA
Sbjct: 53  VELPGRSKAFLEAEVRPQVSGIVTKRSFVEGGHVKQGESLYQIDSAPYKAALVSANADLA 112

Query: 98  SATAQNREAQAQLNRYRQLFPKGAISKDQMDSAEARARSADAAVKSAQAAVEQAKESLGY 157
            A A    A+A+  RY+QL    AISK   D AEA  + A A+V  A+AA+  AK +L Y
Sbjct: 113 RANASLASAKAKAARYQQLVKTNAISKQDFDEAEAAYKEALASVTVAEAAINTAKINLEY 172

Query: 158 TNITAPYDGIVTQRMVELGETVAPGTP--LLRGFSLDELRVE-TEIPQRYQPYVADVSQF 214
           T + AP  G + +  V  G  V       L     LD + V+  +   +     A + Q 
Sbjct: 173 TEVLAPISGRIGKSSVTAGALVTANQSQTLATIQQLDPINVDIAQSSAQLLRLKAKLQQG 232

Query: 215 TVRTAQGEQLKPV-------------EFSLFSYADPQSHTFKTRLELPQNSAALVPGMWV 261
            ++ A    ++ V             +F+  S  D  + +   R E P     L+PGM+V
Sbjct: 233 KLQAADNADVQLVLEDGTVYGHSGKLQFAEVS-VDENTGSVILRAEFPNPDGLLLPGMYV 291

Query: 262 KTEFNYG-QREVLVVPSSAVLRRAELSAVYRVNNGQRALNP--VRLGQVYGDYVEVLSGL 318
           +   N G   + ++VP  A+ R A+  AV  V N Q  +    V   +V  +   + +GL
Sbjct: 292 RAVLNTGTDPQAILVPQKAISRNAKGQAVAMVVNDQGVVEAKIVTTAEVIDNQWRITAGL 351

Query: 319 ELGDVVATQAV 329
           E GD +  + +
Sbjct: 352 EAGDKLIVEGL 362