Pairwise Alignments

Query, 334 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 361 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella sp. ANA-3

 Score = 88.2 bits (217), Expect = 3e-22
 Identities = 82/310 (26%), Positives = 136/310 (43%), Gaps = 41/310 (13%)

Query: 42  GVVQPVNQGSLAAQTSGRVVGLYVDVNDFVKKDQVLLEISAVQQSAALDAAQAQLASATA 101
           G V  V +  LA +  G+V+ L+V   DFVK+D VL EI      A LD+A++ L     
Sbjct: 57  GSVSSVKEAVLAFEVPGKVIKLHVKEGDFVKQDTVLAEIDDRDYQAQLDSAKSDLI---- 112

Query: 102 QNREAQAQLNRYRQLFPKGAISKDQMDSAEARARSADAAVKSAQAAVEQAKESLGYTNIT 161
               A++   RY +     A++      A+         ++ AQAA  QA ++L  T + 
Sbjct: 113 ---VAKSDFQRYEKALKADAVTPQAFQQAKRN-------LEVAQAAFNQADKALTETKLI 162

Query: 162 APYDGIVTQRMVELGETVAPGTPLLRGFSLDELRVETEIPQ----------RYQPYVADV 211
           AP+ G V  R ++L  TV    P+++  S     +   +P+                 D 
Sbjct: 163 APFAGRVVTREIDLFATVHAKQPIMQLHSESAYEMVVSVPESDWAQGERVNSAADIKLDN 222

Query: 212 SQFTVRTAQGEQL---KPVEFSLFSYADPQSHTFKTRL------ELPQNSAALVPGMWVK 262
             F   TA  ++    K  EFS    AD  + T+K ++      + P +S      +++ 
Sbjct: 223 QLFVTLTAFPDKRFEGKITEFS--GQADAATRTYKVKVAFSVPDKTPISSGMTGHAIYLS 280

Query: 263 TEFNYGQREVLVVPSSAVLRRAELSA---VYRVNNGQRALNPVRLGQVYGDYVEVLSGLE 319
           +        +L +P  A++  ++ SA   +Y   NGQ     + +G +    V VLSGL+
Sbjct: 281 SN---ESTNILSIPLDAIVGNSDNSAFVWLYDPINGQVTKKSITIGNITEQTVNVLSGLK 337

Query: 320 LGDVVATQAV 329
           +GDV+A   V
Sbjct: 338 VGDVIAVSGV 347