Pairwise Alignments

Query, 334 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 374 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella sp. ANA-3

 Score = 94.0 bits (232), Expect = 5e-24
 Identities = 77/307 (25%), Positives = 133/307 (43%), Gaps = 20/307 (6%)

Query: 27  FTVKTELISQIVELDGVVQPVNQGSLAAQTSGRVVGLYVDVNDFVKKDQVLLEISAVQQS 86
           F V  +  SQ + L G ++P    SLA+   G ++ L V   D V   Q +L I      
Sbjct: 59  FKVTNQTFSQYIVLTGTIEPTKVASLASPAEGPILNLVVREGDTVNLGQEILRIGRTH-- 116

Query: 87  AALDAAQAQLASATAQNREAQAQLNRYRQLFPKGAISKDQMDSAEARARSADAAVKSAQA 146
               AA +   SA  + R+    L R   L  +  + ++Q+D A +       +++ A+A
Sbjct: 117 ----AADSLQTSAAEEVRKQVLNLKRIETLVKQHTLPEEQLDEALS-------SLEKAKA 165

Query: 147 AVEQAKESLGYTNITAPYDGIVTQRMVELGETVAPGTPLLRGFSLDELRVETEIPQRYQP 206
           A+ QAK++L    +T P+ GI+++ +V  G  V P +PL+  +  D L +   + +  Q 
Sbjct: 166 ALSQAKQALNDYIVTVPWSGIISKVLVSDGHFVIPRSPLVEMYDPDSLVLRFSVAEA-QA 224

Query: 207 YVADVSQFTVRTAQGEQLKPVEFSLFSYADPQSHTFKTRL---ELPQNSAALVPGMWVKT 263
            V         T  G   +  E  +           +TRL    LP N    +PGM+ + 
Sbjct: 225 LVLKKGHKVKATFDGLAGQEFELEIIRAYPDLDRKLRTRLFEASLPANE--FIPGMFARI 282

Query: 264 E-FNYGQREVLVVPSSAVLRRAELSAVYRVNNGQRALNPVRLGQVYGDYVEVLSGLELGD 322
                  +  LV+P   +  + +  +V+ V +       V  G    D +EVLSGL+ G+
Sbjct: 283 RVVQQEHKNTLVIPIDTLQVQGKDKSVFVVTDNIVTRRLVETGLEQDDQIEVLSGLKAGE 342

Query: 323 VVATQAV 329
           ++    +
Sbjct: 343 IIVLTGI 349