Pairwise Alignments

Query, 334 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 354 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella sp. ANA-3

 Score =  105 bits (261), Expect = 2e-27
 Identities = 83/306 (27%), Positives = 142/306 (46%), Gaps = 17/306 (5%)

Query: 25  ERFTVKTELISQIVELDGVVQPVNQGSLAAQTSGRVVGLYVDVNDFVKKDQVLLEISAVQ 84
           E  TV    +S        ++   + ++ ++ +G +  + V+  D V+K Q+L  I A +
Sbjct: 39  ETTTVMQGNVSSFYSTTATLEAPQEANVVSRIAGLIEAINVEEGDRVQKGQILAVIDAKR 98

Query: 85  QSAALDAAQAQLASATAQNREAQAQLNRYRQLFPKGAISKDQMDSAEARARSADAAVKSA 144
           Q   LD ++A++       +  + +LNR +++  K  IS D M   E   +   AA+   
Sbjct: 99  QQYDLDRSEAEV-------KIIEQELNRLKKMTNKEFISADSMAKLEYNLQ---AAIARR 148

Query: 145 QAAVEQAKESLGYTNITAPYDGIVTQRMVELGETVAPGTPLLRGFSLDELRVETEIPQRY 204
             A  Q KES    ++ +P DGIV +R V+ G        L    + DEL     +P++ 
Sbjct: 149 DLAELQVKES----HVVSPIDGIVAKRYVKAGNMAQEFGDLFYIVNQDELHGIVHLPEQQ 204

Query: 205 QPYVADVSQFTVRTAQGEQ--LKPVEFSLFSYADPQSHTFKTRLELPQNSAALVPGMWVK 262
              +    +  V + Q  +  +      +    DPQS TFK  L +P  +A L  GM+ +
Sbjct: 205 LTSLRLGQEAQVFSNQQSKNAIHAKVLRISPVVDPQSGTFKVTLAVPNQNAHLKAGMFTR 264

Query: 263 TEFNYGQRE-VLVVPSSAVLRRAELSAVYRVNNGQRALNPVRLGQVYGDYVEVLSGLELG 321
            E  Y   E V+ VP SA++ +    A+Y ++        V +G   GD VEV+SG++ G
Sbjct: 265 VELKYDTHENVITVPYSALINQDNKQALYVIDGSNANRREVEIGYREGDSVEVVSGIKPG 324

Query: 322 DVVATQ 327
           + V T+
Sbjct: 325 EQVVTR 330