Pairwise Alignments

Query, 334 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 360 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella sp. ANA-3

 Score = 96.7 bits (239), Expect = 8e-25
 Identities = 73/295 (24%), Positives = 136/295 (46%), Gaps = 17/295 (5%)

Query: 38  VELDGVVQPVNQGSLAAQTSGRVVGLYVDVNDFVKKDQVLLEISAVQQSAALDAAQAQLA 97
           VE  G  +     ++  + +  V  L  D  D VKK  +L+++   +Q A +  AQ +++
Sbjct: 51  VEAIGTNKAFESVTITPKVTDVVTSLKFDDGDIVKKGDLLVQLQNAEQIAKVKVAQVKVS 110

Query: 98  SATAQNREAQAQLNRYRQLFPKGAISKDQMDSAEARARSADAAVKSAQAAVEQAKESLGY 157
                  + Q +L R   L     +++ + D  +         + + +A +EQA+ SL  
Sbjct: 111 -------DNQRELARISSLVTSRTVAELERDRLQT-------LIDTTRAELEQAQSSLND 156

Query: 158 TNITAPYDGIVTQRMVELGETVAPGTPLLRGFSLDELRVETEIPQRYQPYVADVSQFTVR 217
            +I AP++G +  R V +G  V PGT +     + +++++  +P+R+   +    Q   +
Sbjct: 157 RSIVAPFNGRLGLRQVSVGSLVTPGTEITTLDDISKIKLDFSVPERFIQDLQPGKQVEAK 216

Query: 218 TA--QGEQLKPVEFSLFSYADPQSHTFKTRLELPQNSAALVPGMWVKTEFNYGQREVLVV 275
                 E  K    S+ S  +P +     R E+P     L+PGM +K +     RE L++
Sbjct: 217 AVAFPDEIFKGKVISIDSRVNPTTRAVIVRAEIPNPDLRLLPGMLMKVKLIKRSREALML 276

Query: 276 PSSAVLRRAELSAVYRVN-NGQRALNPVRLGQVYGDYVEVLSGLELGDVVATQAV 329
           P SA++   +   VY VN +       V +G     +VE+L GLE+G+ V  + +
Sbjct: 277 PESAIIPIQKEHFVYSVNKDNVIERKQVTIGIRTRGWVEILGGLEIGENVVIRGL 331