Pairwise Alignments

Query, 334 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 337 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella sp. ANA-3

 Score =  265 bits (676), Expect = 2e-75
 Identities = 143/328 (43%), Positives = 208/328 (63%)

Query: 1   MKALSWSIALVLASSAYAQNQDSNERFTVKTELISQIVELDGVVQPVNQGSLAAQTSGRV 60
           M A+S ++  +   S +A          V ++  +  V LD  ++ V   +++AQTSGR+
Sbjct: 1   MAAISRTLFTLFVFSPFATQAAPLATLEVMSKPYANWVTLDASIEAVKAATVSAQTSGRI 60

Query: 61  VGLYVDVNDFVKKDQVLLEISAVQQSAALDAAQAQLASATAQNREAQAQLNRYRQLFPKG 120
           V L  DVND V +   LLEI++ +Q A L + +A LA ATA N EAQAQ  RY++LFP+G
Sbjct: 61  VKLNYDVNDVVPEGAALLEITSKEQGAELASYEADLAKATALNVEAQAQYKRYKELFPQG 120

Query: 121 AISKDQMDSAEARARSADAAVKSAQAAVEQAKESLGYTNITAPYDGIVTQRMVELGETVA 180
           AISK  MD A A A++A+ AV +A+A V +A ESL YT ++AP+ GIVT+R+VELGETV+
Sbjct: 121 AISKGAMDEATANAKAAEQAVSAAKARVIKATESLKYTVVSAPFSGIVTERLVELGETVS 180

Query: 181 PGTPLLRGFSLDELRVETEIPQRYQPYVADVSQFTVRTAQGEQLKPVEFSLFSYADPQSH 240
            G PLL GFS  ++R  T++PQRY   + +  +F VR + G +L   + ++FS+ADP SH
Sbjct: 181 VGQPLLSGFSPSQMRAITQVPQRYIQQLKNAPEFMVRLSDGRELTSKDLTIFSFADPVSH 240

Query: 241 TFKTRLELPQNSAALVPGMWVKTEFNYGQREVLVVPSSAVLRRAELSAVYRVNNGQRALN 300
           +++ R+ LP++   L PG W K  F  G+RE + +P+S ++   ELS+VY     Q  L 
Sbjct: 241 SYQVRINLPKDEPNLQPGTWAKALFKNGEREKIQLPTSTLITMNELSSVYLKKGEQFVLT 300

Query: 301 PVRLGQVYGDYVEVLSGLELGDVVATQA 328
            VR+ +  G  VEVL+GL  GD+VA  A
Sbjct: 301 QVRVSEPVGGEVEVLAGLRTGDIVAMDA 328