Pairwise Alignments

Query, 1067 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1049 a.a., efflux protein from Sinorhizobium meliloti 1021

 Score =  296 bits (758), Expect = 5e-84
 Identities = 278/1038 (26%), Positives = 466/1038 (44%), Gaps = 59/1038 (5%)

Query: 38   LLALVGLLMGLFAVMVTPKEEEPQIDVTFADVYIPFPGASPREVESLVTTPAEQVISEIE 97
            LLAL+ ++ G   ++   + E+P+       V   +PGAS +E+E  V    E+ + E  
Sbjct: 27   LLALI-IITGGLGLLRMGQREDPEFTFRVMVVQAVWPGASIQEMEDQVVNKIERKLQETP 85

Query: 98   GIDKIYSFSQPDGAMIVAIFKVGVPRN---DAVVRIYNKLYSNKDWMPQGVGVGEPIIKP 154
             +D + S+++   A+I    +     +   DA  ++  K+    + +P+GV      + P
Sbjct: 86   HLDFVRSYTRAGSAIITVQIEGDTNADEVADAFYQVRKKVGDIANELPEGV------LGP 139

Query: 155  KGIEDVPIVTITLADKS-DRFDQQQLTQVAHGLETELKRIPGTRDIYTIGGQNTIVDVRL 213
               ++     ITL   S D F   +L + A      L   PG   +  +G Q   + + L
Sbjct: 140  YFNDEFGDTFITLHSISGDGFSYPELKRFAIEGRDMLLATPGVEKVVVLGDQPEKIYIDL 199

Query: 214  DPAKMNGFGITLDQLNQSLPAANQSSPMLRLTHDNQEFPVQVGQFLTRVEEVKQLVVGLH 273
                +   G+T + L  ++   N       +    +   + V   +T+VE++++L +   
Sbjct: 200  SSKVLAERGLTFNDLRNAIAGQNNVDYAGSVDTGTRSVRISVEGDVTKVEDIRELRLRAG 259

Query: 274  NGTPVYLEDIATVSFGVNTATQNVWTGDRDGIHPAVTIAVAKKGGENAVDVAKAVEARLV 333
            + T + L DIATV+ G+       +   R   H +V I V    G N  DV KAVEA   
Sbjct: 260  DRT-IRLGDIATVTSGLEDPYARKF---RFNGHDSVQIGVVMAKGFNVTDVGKAVEATYD 315

Query: 334  SLENQLIPQGIDVDITRDYGQTAADKSNTLMGKLAFATTAVVILVLLTMGWRESIVVGMA 393
              E+ L P G+ VD   +  +   +        L  A   V+I+  L++GWR  +V+ +A
Sbjct: 316  RFESAL-PYGVSVDQVSNQPEVVTEAITEFSHALIEALIIVLIVSFLSIGWRSGLVIAIA 374

Query: 394  IIVTLMITLFASWAWGFTLNRVSLFALIFSIGILVDDAIVVVENIHRHMAMGKRKLSELI 453
            I + L  T    +  G  L R+SL ALI ++G+LVDDA++VVE + R +  G  K+ +  
Sbjct: 375  IPLVLAATFAIMYELGIDLQRISLGALIIALGLLVDDAMIVVEMMERKLEEGLEKI-DAA 433

Query: 454  PPAVDEVGGPTILATLTVIAALLPMAFVSGLMGPYMSPIPINASMGMLISLAVAFVLSPW 513
              A      P +  TL   A  +P+ F     G Y+  +     + +++S  VA   +PW
Sbjct: 434  SFAYSSTAFPMLTGTLITTAGFIPVGFAESTAGEYVRSLFYVVGIALVVSWFVAVYFTPW 493

Query: 514  LAGKFLKAGHHQEEGKAANGIFHKIMSPF------VTAPKQGRNRLFLLLTILALIAGSV 567
            L    LK  HH        G  H +           T     R+R+ +LL  LA+   S 
Sbjct: 494  LGYMILKQRHHA-------GTHHDVFDTRFYRRLRTTVGWAVRHRVVVLLMTLAIFVTS- 545

Query: 568  LLPVFQAVVLKMLPFDNKSEFQIVLDMPEGSSLEKTQRVLFEMGATLNDVPEVRDYQIYA 627
             L  FQ +     P  ++ E  + L +PEG+S+++ ++    +   + D  + R    Y 
Sbjct: 546  -LWAFQFIPKNFFPQSSRPEILVDLWLPEGTSIKEVEKQAKALEERMMDDEDKRFIATYI 604

Query: 628  GTAAPINFNGLVRHYFMRNQAHQGDIQVNLLGRKERDRDSHTIASQLRPQLNEIAQRFGG 687
            G  AP  F  L +     N A     Q+ ++ + E  R+   + ++LR  L E       
Sbjct: 605  GEGAPRFFLPLDQQLRNPNFA-----QLLVMAKDEPARER--LIAKLRTILAEDFPSIRA 657

Query: 688  KVKVVEVPPGPPVWSPILAEVYGPTQEIRNEAARKVREIFRETKDIVDVDMYLPERHEKW 747
            KV  + +  GPP   P+   V GP +E     A +V+  F+E   +  +     E     
Sbjct: 658  KVDRLFL--GPPTGWPVQMRVMGPDREEVRRIADQVKTKFQENPMLGAIHDDWLEPVPAM 715

Query: 748  QVVIDRSKAAHLQVPYASIVDALATAVGGKPITYLHSEHSKYPIPIQIQATETAKVR--L 805
            ++VID+ +A  L +    I   L  A+ G P+             + I A E    R  L
Sbjct: 716  KLVIDQDRARALGITSQRIRQMLQAAMSGVPLDSFRDGEET----VSIMAREPGGNRHLL 771

Query: 806  EQVLNMKVGSPNGHAYPLSDLVEVRQTRMDDYIVHKNLVPMVMVVGDMSGELDSPLYGMF 865
              V ++ V +  G   P+S + +V           ++ +P + V G +   +      M 
Sbjct: 772  SAVQSVYVPTDFGGFVPVSQIAKVVPVMEQGIEWRRDRLPTITVRGTLPDGVQPNDVAMQ 831

Query: 866  EIGFALDEQMGLAQYYIHQPDGLS-GVAVAWDGEWTVTYETFRDMGIAYAVGMVLIYLLV 924
                  DE  GL        DGL+ G  V   G    + E+   +     + +V+I +L+
Sbjct: 832  ----LFDELKGLR-------DGLAPGYKVEIQGGAEDSAESQASIAAKAPIMLVVIVILL 880

Query: 925  VAQFKSYLVPLIIMAPIPLTIIGVMPGHALLGAQFTATSMIGMIALAGIIVRNSILLVDF 984
            + Q + +   ++++A  PL IIG      + GA F   +++G+IAL GII+RNSI+LVD 
Sbjct: 881  MVQLQHFGKAMLVLATGPLGIIGAAAALLISGAPFGFVAILGVIALLGIIIRNSIILVDQ 940

Query: 985  INQQVEQGMAFSEAVIQSAAVRAKPIMLTALAAMIGAVFILDDPIFNGLAISLIFGIFVS 1044
            I+Q +  GM  SEA+I +A  R +PI+LTAL A++  + I     +  LA +++ GI V+
Sbjct: 941  IDQDIAAGMERSEAIIGAAVRRFRPIILTALTAVLALIPISRGVFWGPLAYAMMGGILVA 1000

Query: 1045 TVLTLLVIPVLYYVVMRK 1062
            TVLT+LV+P  Y +   K
Sbjct: 1001 TVLTILVLPAGYALFFGK 1018