Pairwise Alignments

Query, 1067 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1028 a.a., AcrB/AcrD/AcrF family transporter (RefSeq) from Shewanella amazonensis SB2B

 Score =  273 bits (698), Expect = 5e-77
 Identities = 249/1045 (23%), Positives = 465/1045 (44%), Gaps = 41/1045 (3%)

Query: 31   QNSAMTPLLALVGLLMGLFAVMVTPKEEEPQIDVTFADVYIPFPGASPREVESLVTTPAE 90
            +NS ++ +  L+ LL G  A +   + E+P   +  A V   +PGA+  EVE  VT P E
Sbjct: 9    KNSVISWMFTLILLLGGSVAFLGLGQLEDPPFTIKDAVVITLYPGATSTEVEEEVTYPVE 68

Query: 91   QVISEIEGIDKIYSFSQPDGAMIVAIFKVGVPRNDAVVRIYNKLYSNKDWMPQGV--GVG 148
            + I  +  +DKI S S    + I    K      D + +I+++L    + M   +  G  
Sbjct: 69   KAIQALPYVDKIKSLSTSGLSQITVTMK-NTYGPDQLPQIWDELRRKVNDMAASLPPGAQ 127

Query: 149  EPIIKPKGIEDVPIVTITLADKSDRFDQQQLTQVAHGLETELKRIPGTRDIYTIGGQNTI 208
             P++      DV  + + +  K   F  ++L      ++ EL+ +PG   +   G Q   
Sbjct: 128  HPMVNDD-FGDVYGIMLMITGKD--FSYRELKDYVDYVKRELELVPGVGKVSLAGEQKEQ 184

Query: 209  VDVRLDPAKMNGFGITLDQLNQSLPAANQSSPMLRLTHDNQEFPVQVGQFLTRVEEVKQL 268
            + V +   K     +  + +   L + N  S    +        ++       VEE+++L
Sbjct: 185  IFVEMSVNKAASSNLDPNLIANLLNSQNMVSDAGNIQVSGDNLKIRTSGSSRSVEELQEL 244

Query: 269  VV-GLHNGTPVYLEDIATVSFGVNTATQNVWTGDRDGIHPAVTIAVAKKGGENAVDVAKA 327
            ++ G      +YL+D+ATV  G      NV + +R+    A+ + ++   G N V V KA
Sbjct: 245  IIPGTQGDKLIYLKDVATVRRGYQEIPTNVLSYNRER---AINLGISFSSGVNVVAVGKA 301

Query: 328  VEARLVSLENQLIPQGIDVDITRDYGQTAADKSNTLMGKLAFATTAVVILVLLTMGWRES 387
            V+ +L  +++   P GI ++   +      +   + +  L  A   V+ ++L  MG +  
Sbjct: 302  VDDKLAQIDSAR-PAGIKIETMYNQPVEVDNSVGSFVWNLIAAVVIVIGVLLFFMGVKSG 360

Query: 388  IVVGMAIIVTLMITLFASWAWGFTLNRVSLFALIFSIGILVDDAIVVVENIHRHMAMGKR 447
            I++G+ + +T + T          L R+SL ALI ++G+LVD+AIVVVE I      GK 
Sbjct: 361  ILIGLILFLTCLGTFVLMLQAEIELQRISLGALIIALGMLVDNAIVVVEGILIGRQQGKT 420

Query: 448  KLSELIPPAVDEVGGPTILATLTVIAALLPMAFVSGLMGPYMSPIPINASMGMLISLAVA 507
             L E     V +   P + AT+  I A  P+       G +   +       + +S   A
Sbjct: 421  TL-EASDAIVKQTMWPLLGATVIAITAFAPIGLSPDSTGEFAGSLFWVLLFSLFLSWITA 479

Query: 508  FVLSPWLAGKFL-KAGHHQEEGKAAN---GIFHKIMSPFVTAPKQGRNRLFLLLTILALI 563
              ++P+ A  F    G  Q EG+  +   G F  +    +    + R  + ++  +LA +
Sbjct: 480  ITITPFFASLFFGDKGEEQLEGQTKDPYGGAFFTLYKVALDVCMRYRF-ISVIAVVLAFV 538

Query: 564  AGSVLLPVFQAVVLKMLPFDNKSEFQIVLDMPEGSSLEKTQRVLFEMGATLNDVPEVRDY 623
            A  V    F  V     P      F + + +PEG+ + +TQR++  M    +   ++ D 
Sbjct: 539  ASVV---GFGYVKQSFFPPSTTPIFLVDVWLPEGTDIRETQRIVTAME---DKAAQLADV 592

Query: 624  QIYAGTAAPINFNGLVRHYFMRNQAHQGDIQVNLLGRKERDRDSHTIASQLRPQLNEIAQ 683
            +  A T        ++ +   +N A  G I +    R         + +Q R ++     
Sbjct: 593  EFVASTVGKGFPRFMLTYAPEKNYASYGQIAI----RTSAFETLEGVMTQFRREMEAGFP 648

Query: 684  RFGGKVKVVEVPPGPPVWSPILAEVYGPTQEIRNEAARKVREIFRETKDIVDVDMYLPER 743
            +   K K +EV  GP   + I A + GP  ++      +V+ +F  T   V+V     ER
Sbjct: 649  QTQLKFKRLEV--GPSTDAKIEARISGPDPDVLRTLGAEVQAVFAATPGTVNVRHDWRER 706

Query: 744  HEKWQVVIDRSKAAHLQVPYASIVDALATAVGGKPITYLHSEHSKYPIPIQIQATETAKV 803
             +      + ++A  L +  + +  AL  +  G  I       +   I  ++   E  +V
Sbjct: 707  VKYIAPRFNETQARRLGIVKSEVDKALKFSFAGLQIGVYREGTNLLSIVGRLPDDE--RV 764

Query: 804  RLEQVLNMKVGSPNGHAY-PLSDLVEVRQTRMDDYIVHKNLVPMVMVVGDMSGELDSPLY 862
             +E + ++++ SP  +   PL  +V+  + + +D I+ +          D    L     
Sbjct: 765  DIESMESIRIWSPVLNTLVPLQQVVDGFEVKFEDPIIQRR---------DRKRTLTVFAD 815

Query: 863  GMFEIGFALDEQMGLAQYYIHQPDGLSGVAVAWDGEWTVTYETFRDMGIAYAVGMVLIYL 922
              FE      E     +  +       G  + W GE+  + +    +     +G + ++L
Sbjct: 816  ADFEYDLLPAELFAKVRPQVEAISMPPGYELVWGGEFESSQDAQESLFAILPMGFLFMFL 875

Query: 923  LVVAQFKSYLVPLIIMAPIPLTIIGVMPGHALLGAQFTATSMIGMIALAGIIVRNSILLV 982
            + V  F S   PL+I A +PL IIG+  G  +L   F+  +++GM++L+G++++N I+L+
Sbjct: 876  VTVFLFNSVRKPLVIWACVPLAIIGITLGLLVLDKPFSFMALLGMLSLSGMLLKNGIVLL 935

Query: 983  DFINQQVEQGMAFSEAVIQSAAVRAKPIMLTALAAMIGAVFILDDPIFNGLAISLIFGIF 1042
            D IN ++ +G    +AV +S   R +P+ + A+  ++G + ++ D  F  +A  ++FG+ 
Sbjct: 936  DQINLEINEGKEPFQAVFESTVSRVRPVCMAAVTTILGMLPLITDAFFESMAAVVMFGLG 995

Query: 1043 VSTVLTLLVIPVLYYVVMRKRFAAH 1067
            V+TVLTLL++PV Y +  +  + A+
Sbjct: 996  VATVLTLLIVPVFYIIFFKIPYRAY 1020