Pairwise Alignments

Query, 1067 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1084 a.a., acriflavin resistance protein (RefSeq) from Shewanella loihica PV-4

 Score = 1358 bits (3514), Expect = 0.0
 Identities = 686/1072 (63%), Positives = 855/1072 (79%), Gaps = 19/1072 (1%)

Query: 6    HRPSQQKVNDMESRLGISGRIAAAFQNSAMTPLLALVGLLMGLFAVMVTPKEEEPQIDVT 65
            H+ +QQ       RLG SGR+AA FQ SA+TPLLAL+GLL+GLFAVMVTPKEEEPQIDVT
Sbjct: 7    HQDNQQS----PKRLGFSGRLAAMFQLSAITPLLALLGLLLGLFAVMVTPKEEEPQIDVT 62

Query: 66   FADVYIPFPGASPREVESLVTTPAEQVISEIEGIDKIYSFSQPDGAMIVAIFKVGVPRND 125
            FAD+YIPFPGA+P EVE LVT P E+VIS+I+GID +YSFSQPDGA+I+AIF+VG+PRN+
Sbjct: 63   FADIYIPFPGATPSEVEHLVTQPMEEVISQIKGIDTLYSFSQPDGALIIAIFEVGIPRNE 122

Query: 126  AVVRIYNKLYSNKDWMPQGVGVGEPIIKPKGIEDVPIVTITLADKSDRFDQQQLTQVAHG 185
            A+V++YN++YSNKD +    GVGEP IKP+GI+DVPIV++TL  K      +QLT +A G
Sbjct: 123  AIVKLYNQVYSNKDKVASQAGVGEPQIKPRGIDDVPIVSLTLWSKDKAQSAEQLTHIAKG 182

Query: 186  LETELKRIPGTRDIYTIGGQNTIVDVRLDPAKMNGFGITLDQLNQSLPAANQSSPMLRLT 245
            LE+ELKRIPGTR+IY++G     ++VR+DPAKM+ +G+T D +N+SL + N  S  + L 
Sbjct: 183  LESELKRIPGTREIYSVGSHEISLNVRIDPAKMSFYGLTYDDINRSLSSNNHVSMPVSLV 242

Query: 246  HDNQEFPVQVGQFLTRVEEVKQLVVGLHN-----GTPVYLEDIATVSFGVNTATQNVWTG 300
             DNQE  VQ GQFL   +EV+QLVV ++        PVYL DIA +S   +  TQ+ W G
Sbjct: 243  QDNQEIKVQTGQFLKSKQEVEQLVVAVYQDESGQSAPVYLGDIAKISLNSDIPTQHAWHG 302

Query: 301  DRDGIHPAVTIAVAKKGGENAVDVAKAVEARLVSLENQLIPQGIDVDITRDYGQTAADKS 360
            D+  I+PAVTIA+ K+ GENAVD+A  +  RL  ++N L+P  +++ ++R+YG+TA DK+
Sbjct: 303  DKSAIYPAVTIAIGKQPGENAVDIANVILERLDKIDNILVPDDVNITVSRNYGKTAGDKA 362

Query: 361  NTLMGKLAFATTAVVILVLLTMGWRESIVVGMAIIVTLMITLFASWAWGFTLNRVSLFAL 420
            NTL+ KL FAT+AVVILV LTMG RES+VVG+AII+TL ITLFASWAWGFTLNR+SLFAL
Sbjct: 363  NTLILKLVFATSAVVILVFLTMGLRESVVVGIAIIITLAITLFASWAWGFTLNRISLFAL 422

Query: 421  IFSIGILVDDAIVVVENIHRHMAMGKRKLSELIPPAVDEVGGPTILATLTVIAALLPMAF 480
            IFSIGILVDDAIVVVENIHRHMA+GKR   ELIP AVDEVGGPTILAT TVIAAL+PMAF
Sbjct: 423  IFSIGILVDDAIVVVENIHRHMALGKRSFVELIPVAVDEVGGPTILATFTVIAALMPMAF 482

Query: 481  VSGLMGPYMSPIPINASMGMLISLAVAFVLSPWLAGKFLKAGHHQEEGKAANGI------ 534
            VSGLMGPYMSPIPINASMGMLISLA+AF+++PWLA K LK GH  + G   + +      
Sbjct: 483  VSGLMGPYMSPIPINASMGMLISLAIAFIVTPWLATKLLK-GHQHQGGDGEHDVDDRMLR 541

Query: 535  -FHKIMSPFVTAPKQGRNRLFLLLTILALIAGSVLLPVFQAVVLKMLPFDNKSEFQIVLD 593
             F +++SPFV   + G+ R+ L   I  LI  +V LPV Q VVLKMLPFDNKSEFQ++LD
Sbjct: 542  LFTRLISPFVRGKQAGKARIGLGAAIALLIMIAVSLPVGQLVVLKMLPFDNKSEFQVMLD 601

Query: 594  MPEGSSLEKTQRVLFEMGATLNDVPEVRDYQIYAGTAAPINFNGLVRHYFMRNQAHQGDI 653
            MPEG+ +E+TQRVL  +   L+ V EV +YQ+YAGTAAP+NFNGLVRHYF+R     GDI
Sbjct: 602  MPEGTPVEQTQRVLKALAMELDKVEEVDNYQLYAGTAAPMNFNGLVRHYFLRQSQELGDI 661

Query: 654  QVNLLGRKERDRDSHTIASQLRPQLNEIAQRFGGKVKVVEVPPGPPVWSPILAEVYGPTQ 713
            QVNL+ + +RDRDSH+IAS++R  L   A+++   VKVVEVPPGPPVWSPILAEVYGP  
Sbjct: 662  QVNLVDKGDRDRDSHSIASEVRRALQATAKQYHANVKVVEVPPGPPVWSPILAEVYGPNA 721

Query: 714  EIRNEAARKVREIFRETKDIVDVDMYLPERHEKWQVVIDRSKAAHLQVPYASIVDALATA 773
            E+R  AA  ++++F +T+D+VD+D+YLP   +KWQV IDR+KA+ + VPY++IVD +AT+
Sbjct: 722  EMRETAANALQQLFHDTQDVVDIDIYLPAAQQKWQVNIDRAKASLMGVPYSNIVDLVATS 781

Query: 774  VGGKPITYLHSEHSKYPIPIQIQATETAKVRLEQVLNMKVGSPNGHAYPLSDLVEVRQTR 833
            VGGK ++YLH  + K P+PI++Q  E AKV LEQVLN+++ + +G++ P+S+L+ + +  
Sbjct: 782  VGGKAVSYLHKPNQKSPVPIKLQLEEGAKVDLEQVLNLRLTNASGNSVPVSELITIHKRA 841

Query: 834  MDDYIVHKNLVPMVMVVGDMSGELDSPLYGMFEIGFALDEQMGLA--QYYIHQPDGLSGV 891
            +D  I+ KN++PM+MVV DM+G LDSPLYGMFEI  +++++ GL   Q+Y++QP GL  +
Sbjct: 842  IDAPIIRKNMIPMIMVVADMAGPLDSPLYGMFEIAGSINQEGGLGFDQHYVNQPSGLDSI 901

Query: 892  AVAWDGEWTVTYETFRDMGIAYAVGMVLIYLLVVAQFKSYLVPLIIMAPIPLTIIGVMPG 951
            AV WDGEW +TYETFRDMGIAY VGM+ IYLLVV QF+SY VPLIIMAPIPLTIIGVMPG
Sbjct: 902  AVLWDGEWKITYETFRDMGIAYGVGMIAIYLLVVGQFRSYSVPLIIMAPIPLTIIGVMPG 961

Query: 952  HALLGAQFTATSMIGMIALAGIIVRNSILLVDFINQQVEQGMAFSEAVIQSAAVRAKPIM 1011
            HALLGAQFTATSMIGMIALAGIIVRNSILLVDFINQ+   G+ F +AVI S AVRAKPIM
Sbjct: 962  HALLGAQFTATSMIGMIALAGIIVRNSILLVDFINQETAAGVPFEQAVIHSGAVRAKPIM 1021

Query: 1012 LTALAAMIGAVFILDDPIFNGLAISLIFGIFVSTVLTLLVIPVLYYVVMRKR 1063
            LT LAAMIGA+FILDDPIFNGLAISLIFGI VST+LTL+VIPVLYY VMR R
Sbjct: 1022 LTGLAAMIGALFILDDPIFNGLAISLIFGILVSTLLTLVVIPVLYYAVMRHR 1073