Pairwise Alignments

Query, 1067 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1042 a.a., acriflavin resistance protein (RefSeq) from Shewanella loihica PV-4

 Score =  291 bits (744), Expect = 2e-82
 Identities = 274/1059 (25%), Positives = 489/1059 (46%), Gaps = 89/1059 (8%)

Query: 33   SAMTPLLALV-GLLMGLFAVMVTPK---EEEPQIDVTFADVYIPFPGASPREVESLVTTP 88
            S   P++ALV  LL+ +F ++   K    E P ++     V   + GAS   +ES +TT 
Sbjct: 7    SVKRPVVALVLSLLLCVFGLVSFSKLAVREMPDVESPVVTVMTSYSGASASIMESQITTV 66

Query: 89   AEQVISEIEGIDKIYSFSQPDGAMIVAIFKV------GVPR-NDAVVRIYNKLYSNKDWM 141
             E  ++ I GID+I S ++   + I   F +      GV    DAV R   +L    D  
Sbjct: 67   LEDELTGISGIDEITSVTRNGMSRITISFDLDWNLTEGVSDVRDAVARAQRRLPDEAD-- 124

Query: 142  PQGVGVGEPIIKPKGIEDVPIVTITLADKSDRFDQQQLTQVAHG-LETELKRIPGTRDIY 200
                   EPI+        P V I L+  S   D+ QLT  A   LE     I G   + 
Sbjct: 125  -------EPIVSKDNGSGEPSVYINLS--SSTMDRTQLTDYAQRVLEDRFSLITGVSSVN 175

Query: 201  TIGGQNTIVDVRLDPAKMNGFGITLDQLNQSLPAANQSSPMLRLTHDNQEFPVQVGQFLT 260
              GG   ++ V+LDP  M G G+T   +  +L + N  SP   + +D     V+  +   
Sbjct: 176  ISGGLYKVMYVQLDPKLMAGRGVTTTDITDALRSENVESPGGEVRNDTTVMTVRTARLYL 235

Query: 261  RVEEVKQLVVGL-HNGTPVYLEDIATVSFGVNTATQNVWTGDRDGIHPAVTIAVAKKGGE 319
              E+   LVV    +G+P+YL+D+A V  G         T   DG+ P +++ +  +   
Sbjct: 236  HPEDFDYLVVRTASDGSPIYLKDVARVFIGAENENS---TFKSDGV-PNLSLGIVAQSDA 291

Query: 320  NAVDVAKAVEARLVSLENQLIPQG----IDVDITRDYGQTAADKSNTLMGKLAFATTAVV 375
            N + VA+ V   +  L+ + +P+G    +D D T    Q+  +  NTL     + T A+V
Sbjct: 292  NPLQVAQRVREEVDKLQ-KFLPEGTQLSVDYDSTVFIDQSIGEVYNTL-----YITGALV 345

Query: 376  ILVL-LTMGW-RESIVVGMAIIVTLMITLFASWAWGFTLNRVSLFALIFSIGILVDDAIV 433
            +LVL L +G  R +++  + + V+L+    A+   G+++N ++L ALI +IG++VDDAIV
Sbjct: 346  VLVLYLFIGQARATLIPAVTVPVSLISAFIAANYLGYSINLLTLMALILAIGLVVDDAIV 405

Query: 434  VVENIHRHMAMGKRKLSELIPPAVDEVGGPTILATLTVIAALLPMAFVSGLMGPYMSPIP 493
            VVENI  H+  G+  +      A  EVG   +  T  ++   LP++F+ G++G   +   
Sbjct: 406  VVENIFHHIERGEPAILAAYKGA-REVGFAVVATTAVLVMVFLPISFMDGMVGRLFTEFA 464

Query: 494  INASMGMLISLAVAFVLSPWLAGKFLKAGHHQEE-GKAANGIFHKIMSPFVTAPKQG-RN 551
            +  +M ++ S  +A  L+P L  K LK  H  +   +  +  F ++ + +  A     R 
Sbjct: 465  VMLAMAVIFSSVIALTLTPVLGSKLLKRKHRPKALNRLMDSGFARLEAWYRRAVAWAVRY 524

Query: 552  RLFLLLTILALIAGSVLLPVFQAVVLKMLPFDNKSEFQIVLDMPEGSSLEKTQRVLFEMG 611
            RL   + I+A + GS LL     V  ++ P +++      +   EG+S  +    +    
Sbjct: 525  RLAAPVVIVACVIGSGLL--MNQVPAQLAPQEDRGVIFAFVKGAEGTSYNRMTSNM---- 578

Query: 612  ATLNDVPEVRDYQIYAGTAAPINFNGLVRHYFMRNQAHQGDI--QVNLLGRKERDRDSHT 669
                D+ E R          P+   G+++ + ++  A  G    Q   +  +  D  +  
Sbjct: 579  ----DIVEQR--------LMPLLSQGVIKSFSVQAPAFGGRAGDQTGFVIMQLEDWQARD 626

Query: 670  IASQLRPQLNEIAQRFGGKVKVVEVPPGPPVWS----PILAEVYGPTQEIRNEAARKVRE 725
            I +Q    L  +A+   G   V+  P  P        P+   + G   +   + A K++ 
Sbjct: 627  INAQ--QALAVVAKALKGIPDVMVRPMLPGFRGKSSEPVQFVLGGSDYDELFKWASKLKA 684

Query: 726  IFRETKDIVDVDMYLPERHEKWQVVIDRSKAAHLQVPYASIVDALATAVGGKPITYLHSE 785
            I   +  +   D+   E   +  V +DR +AA L +  A +   L   +GG+  T     
Sbjct: 685  IADASPIVTGADLDYAETTPELVVSVDRQRAAELGISVAQVSQTLEVMLGGRSETSFIER 744

Query: 786  HSKYPIPIQIQATETAKVRLEQVLNMKVGSPNGHAYPLSDLVEVRQTRMDDYIVHKNLVP 845
              +Y +   ++  E +   +  +  + + + NG    L  +  + +      + H N   
Sbjct: 745  GEEYDV--YLRGKEESFNSMADLSQIYMRAANGELITLDAITHIEEVASAHKLSHTNKQK 802

Query: 846  MVMVVGDMSGELDSPLYGMFEIGFALDEQMGLAQYYIHQPDGLSGVAVAWDGEWTVTYET 905
             + +  ++ GE        + +G ALD     A   +        +++++ GE     E 
Sbjct: 803  SITLKANL-GE-------GYTLGEALDFLDAKAIEILP-----GDISISYTGESKEFKEN 849

Query: 906  FRDMGIAYAVGMVLIYLLVVAQFKSYLVPLIIMAPIPLTIIGVMPGHALLGAQFTATSMI 965
               + + +A+ +++ YL++ AQF+S++ PL++M  +P+ I G   G  L+G      S I
Sbjct: 850  QSSVMLVFALALLVAYLVLAAQFESFINPLVVMLTVPMGIFGGFIGLYLMGLGLNIYSQI 909

Query: 966  GMIALAGIIVRNSILLVDFINQQVEQGMAFSEAVIQSAAVRAKPIMLTALAAMIGAV-FI 1024
            GMI L G++ +N IL+V+F NQ  ++G +  +A++ ++A R +PI++TA   ++GAV  I
Sbjct: 910  GMIMLIGMVTKNGILIVEFANQLRDRGASLEQAILDASARRLRPILMTAFTTLVGAVPLI 969

Query: 1025 LDDPIFNGLAIS----LIFGIFVSTVLTLLVIPVLYYVV 1059
            L     +   I+    + FG+  +T++TLLVIP +Y ++
Sbjct: 970  LSSGAGSESRIAVGTVVFFGMAFATLVTLLVIPAMYRLI 1008