Pairwise Alignments

Query, 1067 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1083 a.a., cation/multidrug efflux pump from Dechlorosoma suillum PS

 Score = 1140 bits (2949), Expect = 0.0
 Identities = 605/1081 (55%), Positives = 770/1081 (71%), Gaps = 37/1081 (3%)

Query: 20   LGISGRIAAAFQNSAMTPLLALVGLLMGLFAVMVTPKEEEPQIDVTFADVYIPFPGASPR 79
            +GISGRIA  FQ S MTPLLALV LL+GLFAVMVTP+EEEPQIDVT A+V +PFPGAS +
Sbjct: 1    MGISGRIAHTFQASPMTPLLALVLLLLGLFAVMVTPREEEPQIDVTMANVVVPFPGASSK 60

Query: 80   EVESLVTTPAEQVISEIEGIDKIYSFSQPDGAMIVAIFKVGVPRNDAVVRIYNKLYSNKD 139
            +VE+LV TP EQV+S + G+D ++S S+P  A+I   F+VGV   DA+VR+Y+ ++SN+D
Sbjct: 61   DVENLVATPGEQVLSRMTGVDHVFSVSRPGMAVITVQFEVGVKNQDALVRLYDTVHSNRD 120

Query: 140  WMPQGVGVGEPIIKPKGIEDVPIVTITLADKSDRFDQQQLTQVAHGLETELKRIPGTRDI 199
            W+P  +GVGEPI+KPKGI+DVPIV++T   +  R    +L Q+A   E E K + GTRD+
Sbjct: 121  WLPANLGVGEPIVKPKGIDDVPIVSLTFWTRDSRRSAFELQQIARSAEVEFKHLAGTRDV 180

Query: 200  YTIGGQNTIVDVRLDPAKMNGFGITLDQLNQSLPAANQSSPMLRLTHDNQEFPVQVGQFL 259
             T+GG + ++ V +D  +MN +G+T   L  +L  AN   P  RL    +E  V  G  +
Sbjct: 181  TTLGGPDHVIRVAMDAERMNAYGVTAQDLRDALQIANNEQPSGRLVEGGREMLVHTGTLI 240

Query: 260  TRVEEVKQLVVGLHNG----TPVYLEDIATVSFGVNTATQNVWTG--------------- 300
               ++VK LVV + +      PV+L D+ATV  G +   + VW G               
Sbjct: 241  ESAQDVKNLVVAVRSEGSIRKPVFLADVATVEDGPDQPKRYVWFGAGPAAAQRGIAAGGE 300

Query: 301  --DRDGIHPAVTIAVAKKGGENAVDVAKAVEARLVSLENQLIPQGIDVDITRDYGQTAAD 358
                DG +PAVT+A++KK G NA DVA AV AR  SL+  LIP+G++V +TR+YG TA +
Sbjct: 301  DASPDGTYPAVTLAISKKPGVNAADVADAVIARAESLKGSLIPEGVEVTVTRNYGATATE 360

Query: 359  KSNTLMGKLAFATTAVVILVLLTMGWRESIVVGMAIIVTLMITLFASWAWGFTLNRVSLF 418
            K+  L+GKL FAT  VV+LV   +G RE+++VG+A+ +TL  TLFASWAWGFTLNRVSLF
Sbjct: 361  KAQKLIGKLVFATAFVVLLVFFALGRREALIVGIAVSLTLAATLFASWAWGFTLNRVSLF 420

Query: 419  ALIFSIGILVDDAIVVVENIHRHMAMGKRK-LSELIPPAVDEVGGPTILATLTVIAALLP 477
            ALIFSIGILVDDAIVVVENIHR   +   K L ELIP AVDEVGGPTILATLTVIAALLP
Sbjct: 421  ALIFSIGILVDDAIVVVENIHRWKLLHPEKTLLELIPGAVDEVGGPTILATLTVIAALLP 480

Query: 478  MAFVSGLMGPYMSPIPINASMGMLISLAVAFVLSPWLAGKFLK--AGHHQEEGKAA---N 532
            MAFV+GLMGPYMSPIPIN+S+GM ISLAVAF+++PWLA K L    GH  ++GK A   +
Sbjct: 481  MAFVTGLMGPYMSPIPINSSLGMAISLAVAFIVTPWLAAKLLAHGGGHGADDGKVAGKLD 540

Query: 533  GIFHKIMSPFVTAPKQGRNRLFLLLTILALIAGSVLLPVFQAVVLKMLPFDNKSEFQIVL 592
             +FHK++ PF+        R  L L +LA I  SV L V + VVLKMLPFDNKSEFQ+VL
Sbjct: 541  RLFHKVLPPFLDERSGAAARKKLFLGVLAAIFLSVSLAVVKLVVLKMLPFDNKSEFQVVL 600

Query: 593  DMPEGSSLEKTQRVLFEMGATLNDVPEVRDYQIYAGTAAPINFNGLVRHYFMRNQAHQGD 652
            DMP G+ LE+T RVL ++GA L  VPEV DYQ YAGTA+PINFNGLVR Y++R++   GD
Sbjct: 601  DMPVGTPLEETARVLKDIGAVLQQVPEVTDYQAYAGTASPINFNGLVRQYYLRSEPEMGD 660

Query: 653  IQVNLLGRKERDRDSHTIASQLRPQLNEIAQRFGGKVKVVEVPPGPPVWSPILAEVYGPT 712
            IQVNL+ +  R R SH IA  +R ++   A+R GG  KVVEVPPGPPV SPI+AE+YGP 
Sbjct: 661  IQVNLVDKHHRSRQSHEIAVAVRAEIEAGARRAGGNAKVVEVPPGPPVMSPIVAEIYGPE 720

Query: 713  QEIRNEAARKVREIFRETKDIVDVDMYLPERHEKWQVVIDRSKAAHLQVPYASIVDALAT 772
            +  R   A++VR +F +  D   VD  +    EK  + ++++KAA L V    IV+ +  
Sbjct: 721  EAGRIAVAKQVRGVFEKAPDFTSVDDSVQADAEKTVLRVNQTKAAQLGVAQKDIVEVVRM 780

Query: 773  AVGGKPITYLHSEHSKYPIPIQIQATETAKVRLEQVLNMKVGSPNGHAYPLSDLVEVRQT 832
             + G+ +T  H++ SKY IP++I      +  L+ +L +KV + +G   P+S++VEVR+ 
Sbjct: 781  GLAGEDVTPAHNQDSKYEIPVRITLPAEVQSSLDALLRLKVRARSGALVPVSEVVEVRRL 840

Query: 833  RMDDYIVHKNLVPMVMVVGDMSGELDSPLYGMFE-----IGFALDEQMG----LAQYYIH 883
              +  I HK+L+P+V V GDM G+LDSPLYGMF      +G  LD   G    LA  +I 
Sbjct: 841  AREKAIYHKDLLPVVYVYGDMGGDLDSPLYGMFAARGDIVGMNLDGLKGAGGTLADTFIR 900

Query: 884  QP-DGLSGVAVAWDGEWTVTYETFRDMGIAYAVGMVLIYLLVVAQFKSYLVPLIIMAPIP 942
            QP D  +G ++ WDGEW +TYETFRDMG AY VG++LIYLLVVA FKSY+ PLIIMAPIP
Sbjct: 901  QPADPYAGFSLKWDGEWQITYETFRDMGAAYGVGLILIYLLVVAHFKSYVTPLIIMAPIP 960

Query: 943  LTIIGVMPGHALLGAQFTATSMIGMIALAGIIVRNSILLVDFINQQVEQGMAFSEAVIQS 1002
            LTIIGVMPGHALL +QFTATSMIGMIALAGIIVRNSILLVDFI ++  +GM F EA++ +
Sbjct: 961  LTIIGVMPGHALLRSQFTATSMIGMIALAGIIVRNSILLVDFIKEETAKGMPFKEAIVTA 1020

Query: 1003 AAVRAKPIMLTALAAMIGAVFILDDPIFNGLAISLIFGIFVSTVLTLLVIPVLYYVVMRK 1062
            AAVRAKPI LTALAAM+GA+FILDDPIFNGLAISLIFGI VST+LTL+VIPVLYY   ++
Sbjct: 1021 AAVRAKPIALTALAAMLGALFILDDPIFNGLAISLIFGILVSTLLTLVVIPVLYYATFKE 1080

Query: 1063 R 1063
            +
Sbjct: 1081 Q 1081