Pairwise Alignments

Query, 1067 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1087 a.a., AcrB/AcrD/AcrF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 1374 bits (3557), Expect = 0.0
 Identities = 703/1069 (65%), Positives = 847/1069 (79%), Gaps = 25/1069 (2%)

Query: 20   LGISGRIAAAFQNSAMTPLLALVGLLMGLFAVMVTPKEEEPQIDVTFADVYIPFPGASPR 79
            LGISGRIAAAFQNSA+TPLLAL+GLL+GLFA++VTPKEEEPQIDVTFADV+IPFPGA+P 
Sbjct: 11   LGISGRIAAAFQNSAITPLLALLGLLLGLFAILVTPKEEEPQIDVTFADVFIPFPGATPT 70

Query: 80   EVESLVTTPAEQVISEIEGIDKIYSFSQPDGAMIVAIFKVGVPRNDAVVRIYNKLYSNKD 139
            EVE+LVT PAEQVISEI+GID +YSFSQPDGAMI+ IF+VGV RNDA+V +YN++YSN D
Sbjct: 71   EVENLVTLPAEQVISEIKGIDTLYSFSQPDGAMIIVIFEVGVSRNDAIVSLYNQIYSNMD 130

Query: 140  WMPQGVGVGEPIIKPKGIEDVPIVTITL-----ADKSDRFDQQQLTQVAHGLETELKRIP 194
             +PQG GVGEP+IKP+GI+DVPIV++TL       K  +   +QLT VA GLETE+KRIP
Sbjct: 131  KLPQGAGVGEPLIKPRGIDDVPIVSLTLWSKDRGSKDQQVSAEQLTHVALGLETEIKRIP 190

Query: 195  GTRDIYTIGGQNTIVDVRLDPAKMNGFGITLDQLNQSLPAANQSSPMLRLTHDNQEFPVQ 254
            GTR+IYT+G    + +VR+DPAKMN F +T D+L QSL   N  S    L   NQE  VQ
Sbjct: 191  GTREIYTVGQHEMVANVRIDPAKMNSFNLTYDKLRQSLNDNNHISMPASLVQGNQEIKVQ 250

Query: 255  VGQFLTRVEEVKQLVVGLHNGT-----PVYLEDIATVSFGVNTATQNVWTGDRDGIHPAV 309
             GQFL  +++VKQLVV +         PVYL DIA +S   +  +Q+VW  D+  I+PAV
Sbjct: 251  AGQFLQSIDDVKQLVVSISQDKQGKPIPVYLADIADISLKSDIPSQSVWHSDKTDIYPAV 310

Query: 310  TIAVAKKGGENAVDVAKAVEARLVSLENQLIPQGIDVDITRDYGQTAADKSNTLMGKLAF 369
            TIA+ K+ G+NAVD+A AV AR+  ++N LIP  ++V ++R+YG+TAADKSNTL+ KL F
Sbjct: 311  TIAIGKQPGQNAVDIADAVLARIAKVDNVLIPNNVEVTVSRNYGETAADKSNTLILKLIF 370

Query: 370  ATTAVVILVLLTMGWRESIVVGMAIIVTLMITLFASWAWGFTLNRVSLFALIFSIGILVD 429
            ATTAVV+LV LTMG RES+VVG+AII+TL ITLFASWAWGFTLNRVSLFALIFSIGILVD
Sbjct: 371  ATTAVVVLVFLTMGARESLVVGVAIIITLAITLFASWAWGFTLNRVSLFALIFSIGILVD 430

Query: 430  DAIVVVENIHRHMAMGKRKLSELIPPAVDEVGGPTILATLTVIAALLPMAFVSGLMGPYM 489
            DAIVVVENIHRHMA+G++  SELIP AVDEVGGPTILAT TVIAALLPMAFVSGLMGPYM
Sbjct: 431  DAIVVVENIHRHMALGRKSFSELIPVAVDEVGGPTILATFTVIAALLPMAFVSGLMGPYM 490

Query: 490  SPIPINASMGMLISLAVAFVLSPWLAGKFLK--------AGHHQEEGKAANG-----IFH 536
            SPIPINASMGMLISL VAFV++PWL+ K LK          HHQE G          +F 
Sbjct: 491  SPIPINASMGMLISLVVAFVVTPWLSRKLLKHHDASSTDKSHHQEAGANETENKMIRLFT 550

Query: 537  KIMSPFVTAPKQGRNRLFLLLTILALIAGSVLLPVFQAVVLKMLPFDNKSEFQIVLDMPE 596
            +++ PF+      + R+ L   I  LI  +V LPV Q VVLKMLPFDNKSEFQ+++DMPE
Sbjct: 551  RLIGPFLQDKGGRKARIGLAAGIFVLIGIAVALPVAQLVVLKMLPFDNKSEFQVMVDMPE 610

Query: 597  GSSLEKTQRVLFEMGATLNDVPEVRDYQIYAGTAAPINFNGLVRHYFMRNQAHQGDIQVN 656
            G+ +E+TQRVL E+   L  VPEV   Q+YAGT AP+NFNGLVRHYF+RN    GDIQVN
Sbjct: 611  GTPVEQTQRVLQELSRYLATVPEVEHLQLYAGTNAPMNFNGLVRHYFLRNSQELGDIQVN 670

Query: 657  LLGRKERDRDSHTIASQLRPQLNEIAQRFGGKVKVVEVPPGPPVWSPILAEVYGPTQEIR 716
            L+ +K R RDSH+IA  +R +L +I   +   +KVVEVPPGPPVWSPI+AEVYGP+  IR
Sbjct: 671  LVDKKHRKRDSHSIAISVREELQQIGAPYQANIKVVEVPPGPPVWSPIVAEVYGPSPAIR 730

Query: 717  NEAARKVREIFRETKDIVDVDMYLPERHEKWQVVIDRSKAAHLQVPYASIVDALATAVGG 776
             +AA +++ +FRETKD+VD+D++LP   +KWQV+IDRSKA+ + VPY++IVD +AT+VGG
Sbjct: 731  EQAAYEMQSLFRETKDVVDIDIFLPAAQQKWQVMIDRSKASLMAVPYSNIVDLIATSVGG 790

Query: 777  KPITYLHSEHSKYPIPIQIQATETAKVRLEQVLNMKVGSPNGHAYPLSDLVEVRQTRMDD 836
            K ++YLH    K P PI++Q  E AK+ LEQVLNMK+ S  G + P+S+LV +++  +D 
Sbjct: 791  KDVSYLHIAQQKQPAPIRLQLQEGAKIDLEQVLNMKLQSQTGQSVPVSELVTIKRGNIDA 850

Query: 837  YIVHKNLVPMVMVVGDMSGELDSPLYGMFEIGFALDEQMGLA--QYYIHQPDGLSGVAVA 894
             I+HKN+VPM+MVV DM+G LDSPLYGMF++   +D + GL   Q+YIHQP GL  VAV 
Sbjct: 851  PIIHKNMVPMIMVVADMAGPLDSPLYGMFDMASKIDGEGGLGFDQHYIHQPTGLDSVAVL 910

Query: 895  WDGEWTVTYETFRDMGIAYAVGMVLIYLLVVAQFKSYLVPLIIMAPIPLTIIGVMPGHAL 954
            WDGEW +TYETFRDMGIAY VGM+ IYLLVVAQF+SYLVPLIIMAPIPLT+IGVMPGHAL
Sbjct: 911  WDGEWKITYETFRDMGIAYGVGMIAIYLLVVAQFRSYLVPLIIMAPIPLTVIGVMPGHAL 970

Query: 955  LGAQFTATSMIGMIALAGIIVRNSILLVDFINQQVEQGMAFSEAVIQSAAVRAKPIMLTA 1014
            LGAQFTATSMIGMIALAGIIVRNSILLVDFINQ+   G+ F  AVI S AVRAKPIMLTA
Sbjct: 971  LGAQFTATSMIGMIALAGIIVRNSILLVDFINQETAAGVPFERAVIHSGAVRAKPIMLTA 1030

Query: 1015 LAAMIGAVFILDDPIFNGLAISLIFGIFVSTVLTLLVIPVLYYVVMRKR 1063
            LAAMIGA+FILDDPIFNGLAISLIFGIF+ST+LTL+VIPV YY  M+ R
Sbjct: 1031 LAAMIGALFILDDPIFNGLAISLIFGIFISTLLTLIVIPVFYYSAMKNR 1079