Pairwise Alignments

Query, 1067 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1037 a.a., aminoglycoside/multidrug transporter subunit AcrD from Klebsiella michiganensis M5al

 Score =  251 bits (641), Expect = 2e-70
 Identities = 261/1068 (24%), Positives = 477/1068 (44%), Gaps = 92/1068 (8%)

Query: 38   LLALVGLLMGLFAVMVTPKEEEPQIDVTFADVYIPFPGASPREVESLVTTPAEQVISEIE 97
            +LA++  L G+ A++  P E+ P++      +   +PGAS + +E+ VT   EQ ++ ++
Sbjct: 14   VLAILLCLTGILAILSLPVEQYPELAPPNVRITANYPGASAQTLENTVTQVIEQNMTGLD 73

Query: 98   GIDKIYSFSQPDG---AMIVAIFKVGVPRNDAVVRIYNKLYSNKDWMPQGVGVGEPIIKP 154
             +  +Y  SQ  G   A +   F  G   ++AV ++ N+L S    +PQ V      ++ 
Sbjct: 74   NL--MYMSSQSSGTGQATVTLSFTAGTDPDEAVQQVQNQLQSAMRKLPQAVQNQGVTVRK 131

Query: 155  KGIEDVPIVTITLADKSDRFDQQQLTQ-VAHGLETELKRIPGTRDIYTIGGQNTIVDVRL 213
             G  D  I+TI         D+Q +   VA  ++  L R+ G  DI   G Q ++  + L
Sbjct: 132  TG--DTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRVNGVGDIDAYGSQYSM-RIWL 188

Query: 214  DPAKMNGFGITLDQLNQSLPAANQSSPMLRL----THDNQEFPVQVGQ--FLTRVEEVKQ 267
            DPAK+N F +T   +  ++ + N    + +L    + D Q     +     L   E+ + 
Sbjct: 189  DPAKLNSFQMTAKDVTDAISSQNAQIAVGQLGGTPSVDKQALNATINSQSLLQTPEQFRD 248

Query: 268  LVVGLH-NGTPVYLEDIATVSFGVNTATQNVWTGDRDGIHPAVTIAVAKKGGENAVDVAK 326
            + + ++ +G+ V L D+ATV  G            R     A  + V    G N +  A+
Sbjct: 249  ITLRVNQDGSEVTLGDVATVEMGAEKYDYL----SRYNRQAASGLGVKLASGANEMATAE 304

Query: 327  AVEARLVSLENQLIPQGIDVDITRDYGQTAADKSN-TLMGKLAFATTAVVILV--LLTMG 383
             V  RL  L +Q  P G++  +   Y  T+  K++ T + K      A+V LV  L    
Sbjct: 305  RVIDRLNEL-SQYFPHGLEYKVA--YETTSFVKASITDVVKTLLEAIALVFLVMYLFLQN 361

Query: 384  WRESIVVGMAIIVTLMITLFASWAWGFTLNRVSLFALIFSIGILVDDAIVVVENIHRHMA 443
            +R +++  +A+ V LM T    +A G+++N +++FA++ +IG+LVDDAIVVVEN+ R M+
Sbjct: 362  FRATLIPTIAVPVVLMGTFAVLYACGYSINTLTMFAVVLAIGLLVDDAIVVVENVERIMS 421

Query: 444  MGKRKLSELIPPAVDEVGGPTILATLTVIAALLPMAFVSGLMGPYMSPIPINASMGMLIS 503
                   E    ++ ++ G  +   + + A  +PMAF  G  G       I     M++S
Sbjct: 422  EEGLSPREATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVLS 481

Query: 504  LAVAFVLSPWLAGKFLKAGH----HQEEGKAA--NGIFHKIMSPFVTAPKQGRNRLFLLL 557
            + VA +L+P L    LK  H    H + G     N  F++  S + TA  +  +R    +
Sbjct: 482  VLVAMILTPALCATLLKPVHKGETHGQRGFFGWFNRTFNRNASRYETAVGKILHRSLRWI 541

Query: 558  TILALIAGSVLLPVFQAVVLKMLPFDNKSEFQIVLDMPEGSSLEKTQRVLFEMGATLNDV 617
             I  L+ G ++  +F  +    LP +++  F   + +P GS+ ++T +V+ +      + 
Sbjct: 542  MIYVLLLGGMVF-LFLHLPTSFLPLEDRGMFTTSVQLPSGSTQQQTLKVVQQAEDYFLNN 600

Query: 618  PEVRDYQIYAGTAAPINFNGL-VRHYFMRNQAHQGDIQVNLLGRKERDRDSHTIASQLRP 676
             +     ++A   +    NG  V   F+R               K+ D+   T  S    
Sbjct: 601  EKQNVESVFATIGSGPGGNGQNVARMFVR--------------LKDWDQRDPTTGSSF-- 644

Query: 677  QLNEIAQRFGGKVKVVEV-PPGPPVWSPI---------LAEVYGPTQEIRNEAARKVREI 726
             + E A +   K+K   V    PP  S +         L +  G   E    A   + E+
Sbjct: 645  AIIERATKAFNKIKEARVFASSPPAISGLGSSAGFDMELEDHAGNGHEALMAARDTLLEL 704

Query: 727  FRETKDIVDVDMYLPERHEKWQVVIDRSKAAHLQVPYASIVDALATAVGGKPITYLHSEH 786
              +   +  V     +   + QV ID+ KA  L V    I D L TA G    +Y++   
Sbjct: 705  AAKNNQLTRVRHNGLDDSPQLQVDIDQRKAQALGVSIDDINDTLQTAWGS---SYVNDFM 761

Query: 787  SKYPI-PIQIQATETAKVRLEQVLNMKVGSPNGHAYPLSDLVEVRQTRMDDYIVHKNLVP 845
             +  +  + +QA    ++  + +    V + +G   P S     R       +   N   
Sbjct: 762  DRGRVKKVYVQAAAPYRMLPDDINLWYVRNSSGTMVPFSAFATSRWETGSPRLERYNGYS 821

Query: 846  MVMVVGDMSGELDSPLYGMFEIGFALDEQMGLAQYYIHQPDGLSGVAVAWDGEWTVTYET 905
             V +VG+ +  + +        G A+     LAQ     P+G       +  EWT     
Sbjct: 822  AVEIVGEAAPGVST--------GTAMTLMEELAQ---QLPNG-------FGLEWTAMSYQ 863

Query: 906  FRDMG----IAYAVGMVLIYLLVVAQFKSYLVPLIIMAPIPLTIIGVMPGHALLGAQFTA 961
             R  G      YA+ +++++L + A ++S+ VP  +M  +PL +IG +    + G +   
Sbjct: 864  ERLSGAQAPALYAISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDV 923

Query: 962  TSMIGMIALAGIIVRNSILLVDFINQQVEQGMAFSEAVIQSAAVRAKPIMLTALAAMIGA 1021
               +G++ + G+  +N+IL+V+F N+  ++G     A + +   R +PI++T+LA + G 
Sbjct: 924  YFQVGLLTVIGLSAKNAILIVEFANELNQKGEDLLTATLSACRQRLRPILMTSLAFIFGV 983

Query: 1022 VFILDDP-----IFNGLAISLIFGIFVSTVLTLLVIPVLYYVVMRKRF 1064
            + +           + +   ++ G+  +TVL +  +P L++V++R+RF
Sbjct: 984  LPMATSTGAGSGSQHAVGTGVMGGMISATVLAIFFVP-LFFVLVRRRF 1030