Pairwise Alignments

Query, 1067 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1022 a.a., cation/multidrug efflux pump acrB5 from Caulobacter crescentus NA1000

 Score =  296 bits (758), Expect = 5e-84
 Identities = 267/1045 (25%), Positives = 480/1045 (45%), Gaps = 69/1045 (6%)

Query: 44   LLMGLFAVMVTPKEEEPQIDVTFADVYIPFPGASPREVESLVTTPAEQVISEIEGIDKIY 103
            +++G  A    P+ E+P   +    V    PGA P E+E LV  P E  +  ++ I+K+ 
Sbjct: 24   VMLGFNAFTSIPRSEDPHFPIPIVIVRAVLPGAEPSEMEQLVVDPIEDAVDGLDNIEKVE 83

Query: 104  SFSQPDGAMIVAI---FKVGVPRN-DAVVRIYNKLYSNKDWMPQGVGVGEPIIKPKGIED 159
            S S  DGA +V++   + V   R  D VVR  N +  N   +P G+   +  I+     +
Sbjct: 84   SVSL-DGAAVVSVHFTWDVDPERKYDQVVREVNAIRGN---LPTGLARLD--IQRARTTE 137

Query: 160  VPIVTITLADKSDRFDQQQLTQVAHGLETELKRIPGTRDIYTIGGQNTIVDVRLDPAKMN 219
            V +V + L   SD    ++L +VA  L   L R+PG R+    G   + V V LD A+++
Sbjct: 138  VSVVQVALT--SDTLPMRRLEKVADRLRERLDRVPGVREAQYWGAPPSDVQVTLDLARLS 195

Query: 220  GFGITLDQLNQSLPAANQSSPMLRLTHDNQEFPVQVGQFLTRVEEVKQLVVGLHNGTPVY 279
               +    +  +L AA   +P+  +    + F V+ G     ++ +    V    G  V 
Sbjct: 196  ALKLPATAVTDALRAAGAEAPIGAVQAGERRFNVKSGGAFRDLKTIGDTPVRSIGGKVVR 255

Query: 280  LEDIATVSFGVNTATQNV-WTGDRDGIHPAVTIAVAKKGGENAVDVAKAVEARLVSLENQ 338
            + D+AT+ +     T    + G R     AV I V +K G++   + + V   L   E  
Sbjct: 256  VSDVATIGWAQQEPTHVTRFNGKR-----AVFITVKQKDGQDVAKITQEVRKVLDEYERA 310

Query: 339  LIPQGIDVDITRDYGQTAADKSNTLMGKLAFATTAVVILVLLTMGWRESIVVGMAIIVTL 398
            L P G+ ++      +    +   L      A   +V++ LL +G R  +VV ++I ++L
Sbjct: 311  L-PAGVKLERAFFQAENVKHRLKNLFRDFGIALV-LVLITLLPLGPRAGVVVMVSIPLSL 368

Query: 399  MITLFASWAWGFTLNRVSLFALIFSIGILVDDAIVVVENIHRHMAMGKRKLSELIPPAVD 458
            +I L    A+GFTLN++S+   + S+G+LVDD+IV+ ENI R +  G+ + +E       
Sbjct: 369  LIGLSMLQAFGFTLNQLSIAGFVLSLGLLVDDSIVITENIARRIREGEER-TEAAVNGAR 427

Query: 459  EVGGPTILATLTVIAALLPMAFVSGLMGPYMSPIPINASMGMLISLAVAFVLSPWLAGKF 518
            ++G   +  T T++ A LP+  +    G Y+  +P+     +  SL V+  + P+LA + 
Sbjct: 428  QIGLAVVGCTATLMLAFLPLMALPAGSGAYIKSLPVTVLCTVGASLLVSLTIIPFLASRI 487

Query: 519  LKAGHHQEEG----KAANGIFHKIMSPFVTAPKQGRNRLFLLLTILALIAGSVLLPVFQA 574
            L   H   EG    +A NG   +   P + A    R  L L L +LAL A +V  P+ + 
Sbjct: 488  LDK-HSDPEGNALLRAVNGGIQRFYRPVLHA-SLARPWLALAL-MLALCATTV--PLVKV 542

Query: 575  VVLKMLPFDNKSEFQIVLDMPEGSSLEKTQRVLFEMGATLNDVPEVRDYQIYAGTAAPIN 634
            +   + P     +F I ++ P+G+SL +T + L  + A L   PE+       G   P  
Sbjct: 543  IGSSLFPPAETPQFLIRIETPDGASLARTDQALRFVDARLAKEPEILWRASNLGRGNP-- 600

Query: 635  FNGLVRHYFMRNQAHQGDIQVNLLGRKE--RDRDSHTIASQLRPQLNEIAQRFGGKVKVV 692
                 + ++ + Q    +    +    E  +   S  +   LR    + A+  G ++ VV
Sbjct: 601  -----QIFYNKTQRESSNSFAEVYASFEAWKPGKSDKVLDALRA---DFAKYPGARITVV 652

Query: 693  EVPPGPPVWSPILAEVYGPTQEIRNEAARKVREIFRETKDIVDVDMYLPERHEKWQVVID 752
                GPP+ +PI   + G   E+    A +     ++T    DV   +        + +D
Sbjct: 653  AFENGPPIDAPIAIRITGQNLEVLKALAARTEAALKDTPGARDVSNPMRLDRTDLDLGVD 712

Query: 753  RSKAAHLQVPYASIVDALATAVGGKPIT-YLHSEHSKYPIPIQI---QATETAKVRLEQV 808
             +KAA L VP  +       A+ G+    +   +   Y + +++   Q    A+  L  +
Sbjct: 713  EAKAAALGVPAGAARRVTRLALSGEEAARFRDPDGDDYAVRVRLPTAQVDGAARNPLSAL 772

Query: 809  LNMKVGSPNGHAYPLSDL----VEVRQTRMDDYIVHKNL-VPMVMVVGDMSGELDSPLYG 863
              + V +  G A PL  +    +     R+D +   + + V   +  G ++ ++      
Sbjct: 773  NGVYVPTAEGEAAPLGAIATPTLRSSPARIDRFDRERTVTVTSYVATGYLTAKVTQ---- 828

Query: 864  MFEIGFALDEQMGLAQYYIHQPDGLSGVAVAWDGEWTVTYETFRDMGIAYAVGMVLIYLL 923
              ++   L++++ +            G  ++  G+     E+F  +G A  V +  I  +
Sbjct: 829  --DVVQRLEKEVPMP----------PGYRLSLGGQAEAQSESFAGLGAAVLVAIFGILAV 876

Query: 924  VVAQFKSYLVPLIIMAPIPLTIIGVMPGHALLGAQFTATSMIGMIALAGIIVRNSILLVD 983
            +V +F+ +   L++   IP  I G +   AL G   + T+ IG+IAL GI ++NSILLVD
Sbjct: 877  LVLEFQKFKTALVVAGIIPFGIFGAVLALALTGNSLSFTATIGLIALIGIEIKNSILLVD 936

Query: 984  FINQQVEQGMAFSEAVIQSAAVRAKPIMLTALAAMIG--AVFILDDPIFNGLAISLIFGI 1041
            F  Q   +GM   +A+ ++  VR  P++LT++ A+ G   + +    +++ LAI++I G+
Sbjct: 937  FTEQLRREGMNLHDAIEKAGEVRFLPVLLTSVTAIGGLLPLALERSGLYSPLAIAIIGGL 996

Query: 1042 FVSTVLTLLVIPVLYYVVMRKRFAA 1066
              ST+L+ +  PV+Y++  R +  A
Sbjct: 997  ITSTLLSRVATPVMYWLTARGKAEA 1021