Pairwise Alignments
Query, 1067 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056
Subject, 1052 a.a., putative cation efflux transporter (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482
Score = 302 bits (773), Expect = 1e-85
Identities = 250/1049 (23%), Positives = 483/1049 (46%), Gaps = 55/1049 (5%)
Query: 29 AFQNSAMTPLLALVGLLMGLFAVMVTPKEEEPQIDVTFADVYIPFPGASPREVESLVTTP 88
A + MT L L ++ GLF++ P + P ID V +PGAS ++E+ VT P
Sbjct: 7 AVKKPIMTSLCFLAVVIFGLFSLSKLPIDLYPDIDTNTIMVMTAYPGASASDIENNVTRP 66
Query: 89 AEQVISEIEGIDKIYSFSQPDGAMIVAIFKVGVPRNDAVVRIYNKLYSNKDWMPQGVGVG 148
E ++ + + I S S + ++I F+ G + + +KL +P V
Sbjct: 67 LENTLNAVSNLKHITSRSSENMSLITLEFEFGNDIDVLTNDVRDKLDMVSSQLPDDVE-- 124
Query: 149 EPIIKPKGIEDVPIVTITLADKSDRFDQQQLTQVAHGLETELKRIPGTRDIYTIGGQNTI 208
PII + +PIV +++ + ++ + L RIPG + G
Sbjct: 125 NPIIFKFSTDMIPIVLLSVQANESQAALYKILD--DRVVNPLARIPGVGTVSISGAPQRE 182
Query: 209 VDVRLDPAKMNGFGITLDQLNQSLPAANQSSPMLRLTHDNQEFPVQVGQFLTRVEEVKQL 268
+ V DP K+ + ++++ ++ + A N++ P ++ + ++V ++ +
Sbjct: 183 IQVYCDPNKLEAYNLSIETISSIIGAENKNIPGGNFDIGSETYALRVEGEFDDSRQLADI 242
Query: 269 VVGLHNGTPVYLEDIATVSFGVNTATQNVWTGDRDGIHPAVTIAVAKKGGENAVDVAKAV 328
VVG HNG V+L D+A + V+T + +G+ A+ I V K+ G N+V++++ V
Sbjct: 243 VVGTHNGANVFLRDVARI---VDTVEERAQETYNNGVQGAM-IVVQKQSGANSVEISRKV 298
Query: 329 EARLVSLENQLIPQGIDVDITRDYGQTAADKSNTLMGKLAFATTAVVILVLLTMG-WRES 387
E L L+ L P + + + D + ++L + +A VVI+V L +G WR +
Sbjct: 299 EEALPRLQKNL-PSDVKLGVIVDTSDNILNTIDSLAETVMYALLFVVIVVFLFLGRWRAT 357
Query: 388 IVVGMAIIVTLMITLFASWAWGFTLNRVSLFALIFSIGILVDDAIVVVENIHRHMAMGKR 447
+++ + I ++L+ + G T+N +SL +L +IG++VDDAIVV+EN+ H+ G
Sbjct: 358 LIICITIPLSLIASFIYLAITGNTINIISLSSLSIAIGMVVDDAIVVLENVTTHIERGSD 417
Query: 448 KLSELIPPAVDEVGGPTILATLTVIAALLPMAFVSGLMGPYMSPIPINASMGMLISLAVA 507
+ +EV I +TLT+IA P+ VSG+ G + M +S A
Sbjct: 418 PKQAAVH-GTNEVAISVIASTLTMIAVFFPLTMVSGMSGVLFKQLGWMMCAIMFVSTVAA 476
Query: 508 FVLSPWLAGKFLKAGHHQEEGKAANGIFHKIMSPFVTAPKQG---------RNRLFLLLT 558
L+P L + L+ Q+ +F + + A G R+R +++
Sbjct: 477 LSLTPMLCSQLLRL---QKRPSKMFKLFFTPIEKALDALDTGYAKMLNWAVRHRPVVIVG 533
Query: 559 ILALIAGSVLLPVFQAVVLKMLPFDNKSEFQIVLDMPEGSSLEKTQRVLFEMG----ATL 614
+A S+L + + + P + + + L++P G+ E Q + ++
Sbjct: 534 CIAFFVVSLLCA--KGIGTEFFPAQDNARIAVQLELPIGTRKEIAQELSEKLTNQWLTKY 591
Query: 615 NDVPEVRDYQIYAGTAAPINFNGLVRHYFMRNQAHQGDIQVNLLGRKERDRDSHTIASQL 674
D+ +V +Y + G A N ++ N +H ++L+ +RD + ++
Sbjct: 592 KDIMKVCNYTV--GQADSDNTWASMQD----NGSHIISFNISLVDPGDRDISLEAVCDEM 645
Query: 675 RPQLNEIAQRFGGKVKVVEVPPGPPVWSPILAEVYGPTQEIRNEAARKVREIFRETKDIV 734
R L + +V + G + E+YG + + A +++ K +
Sbjct: 646 RQDLKGYPEFSKAQVILGGSNTGMSAQASADFEIYGYDMTMTDSVAARLKRELLTVKGVT 705
Query: 735 DVDMYLPERHEKWQVVIDRSKAAHLQVPYASIVDALATAVGGKPITYLHSEHSKYPIPIQ 794
+V++ + ++QV DR K A + A+ + L + G + + +Y I +
Sbjct: 706 EVNISRSDYQPEYQVDFDREKLAMHGLNLATAGNYLRNRINGAVASKYREDGDEYDI--K 763
Query: 795 IQATETAKVRLEQVLNMKVGSPNGHAYPLSDLVEVRQTRMDDYIVHKNLVPMVMVVGDMS 854
++ + LE + N+ + + G + + D+ +V + I K+ +V V +S
Sbjct: 764 VRYAPEYRTSLESIENILIYNAKGESVRVKDVGKVVERFAPPTIERKDRERIVTVSAVIS 823
Query: 855 GELDSPLYGMFEIGFALDEQMGLAQYYIHQPDGLSGVAVAWDGEWTVTYETFRDMGIAYA 914
G +PL + G L ++M + + + G + ++FRD+G
Sbjct: 824 G---APLGDVVAAGNKLIDKMDIP----------GEITIQISGSYEDQQDSFRDLGTLGI 870
Query: 915 VGMVLIYLLVVAQFKSYLVPLIIMAPIPLTIIGVMPGHALLGAQFTATSMIGMIALAGII 974
+ ++L+++++ AQF+S P IIM +P GV+ G+ + S++G I L GI+
Sbjct: 871 LIVILVFIVMAAQFESLTYPFIIMFSLPFAFSGVLMALFFTGSTLSVMSLLGGIMLIGIV 930
Query: 975 VRNSILLVDFINQQVEQGMAFSEAVIQSAAVRAKPIMLTALAAMIGAVFIL-----DDPI 1029
V+N I+L+D+I E+GMA +V+ S R +P+++T ++G + + +
Sbjct: 931 VKNGIVLIDYITLCRERGMAVINSVVTSGKSRLRPVLMTTATTVLGMIPMAIGGGQGSEM 990
Query: 1030 FNGLAISLIFGIFVSTVLTLLVIPVLYYV 1058
++ +AI++I G+ VSTVLTL++IP LY V
Sbjct: 991 WSPMAIAVIGGLTVSTVLTLVLIPTLYCV 1019
Score = 65.1 bits (157), Expect = 3e-14
Identities = 80/358 (22%), Positives = 142/358 (39%), Gaps = 24/358 (6%)
Query: 174 FDQQQLTQVAHGLETELKRIPGTRDI-YTIGGQNTIVDVRLDPAKMNGFGITLDQLNQSL 232
+D VA L+ EL + G ++ + V D K+ G+ L L
Sbjct: 682 YDMTMTDSVAARLKRELLTVKGVTEVNISRSDYQPEYQVDFDREKLAMHGLNLATAGNYL 741
Query: 233 PAANQSSPMLRLTHDNQEFPVQVG---QFLTRVEEVKQLVVGLHNGTPVYLEDIATVSFG 289
+ + D E+ ++V ++ T +E ++ +++ G V ++D+ V
Sbjct: 742 RNRINGAVASKYREDGDEYDIKVRYAPEYRTSLESIENILIYNAKGESVRVKDVGKVV-- 799
Query: 290 VNTATQNVWTGDRDGIHPAVTIAVAKKGGENAVDVAKAVEARLVSLENQLIPQGIDVDIT 349
A + DR+ I VT++ G + V A ++ IP I + I+
Sbjct: 800 ERFAPPTIERKDRERI---VTVSAVISGAP----LGDVVAAGNKLIDKMDIPGEITIQIS 852
Query: 350 RDYGQTAADKSNTLMGKLAFATTAVVILVLLTMGWR-ESIVVGMAIIVTLMIT----LFA 404
Y + L +VILV + M + ES+ I+ +L L A
Sbjct: 853 GSY-----EDQQDSFRDLGTLGILIVILVFIVMAAQFESLTYPFIIMFSLPFAFSGVLMA 907
Query: 405 SWAWGFTLNRVSLFALIFSIGILVDDAIVVVENIHRHMAMGKRKLSELIPPAVDEVGGPT 464
+ G TL+ +SL I IGI+V + IV+++ I G ++ ++ + P
Sbjct: 908 LFFTGSTLSVMSLLGGIMLIGIVVKNGIVLIDYITLCRERGMAVINSVVTSGKSRLR-PV 966
Query: 465 ILATLTVIAALLPMAFVSGLMGPYMSPIPINASMGMLISLAVAFVLSPWLAGKFLKAG 522
++ T T + ++PMA G SP+ I G+ +S + VL P L F G
Sbjct: 967 LMTTATTVLGMIPMAIGGGQGSEMWSPMAIAVIGGLTVSTVLTLVLIPTLYCVFAGTG 1024
Score = 43.5 bits (101), Expect = 8e-08
Identities = 59/277 (21%), Positives = 120/277 (43%), Gaps = 22/277 (7%)
Query: 798 TETAKVRLE-------QVLNMKVGSPNGHAYPLSDLVEVRQTRMDD-YIVHKNLVPMVMV 849
+ET +R+E Q+ ++ VG+ NG L D+ + T + + N V M+
Sbjct: 222 SETYALRVEGEFDDSRQLADIVVGTHNGANVFLRDVARIVDTVEERAQETYNNGVQGAMI 281
Query: 850 VGDMSGELDSPLYGMFEIGFALDEQMGLAQYYIHQPDGLSGVAVAWDGEWTVTYETFRDM 909
V +S EI ++E + Q + D GV V T ++ +
Sbjct: 282 VVQKQSGANS-----VEISRKVEEALPRLQKNLPS-DVKLGVIVDTSDNILNTIDSLAET 335
Query: 910 GIAYAVGMVLIYLLVVAQFKSYLVPLIIMAPIPLTIIGVMPGHALLGAQFTATSMIGMIA 969
+ + +V++ L + ++++ LII IPL++I A+ G S+ +
Sbjct: 336 VMYALLFVVIVVFLFLGRWRA---TLIICITIPLSLIASFIYLAITGNTINIISLSSLSI 392
Query: 970 LAGIIVRNSILLVDFINQQVEQGMAFSEAVIQSA-----AVRAKPIMLTALAAMIGAVFI 1024
G++V ++I++++ + +E+G +A + +V A + + A+ + V
Sbjct: 393 AIGMVVDDAIVVLENVTTHIERGSDPKQAAVHGTNEVAISVIASTLTMIAVFFPLTMVSG 452
Query: 1025 LDDPIFNGLAISLIFGIFVSTVLTLLVIPVLYYVVMR 1061
+ +F L + +FVSTV L + P+L ++R
Sbjct: 453 MSGVLFKQLGWMMCAIMFVSTVAALSLTPMLCSQLLR 489