Pairwise Alignments

Query, 313 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 303 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  196 bits (498), Expect = 6e-55
 Identities = 111/293 (37%), Positives = 168/293 (57%), Gaps = 1/293 (0%)

Query: 1   MKALNDLNLFVETARQGSFSKAANSLSLTTAAVSAAIRRLEEQVQFPLFVRSTRHIRLTH 60
           M  +NDL L +  A   S S A+  + +T AA SAA++RLE+++   LF RSTR ++LT 
Sbjct: 1   MYHINDLQLALRIAALESLSAASKEVGMTPAAASAALQRLEKKLGCQLFARSTRRLQLTE 60

Query: 61  EGEIFLAKTQTALATLQEGLDQIACARGQLAGQLHISAPSDLGRNLLLDWIDEFIALHPN 120
           EG IFL   + ALA L+     +A  RG+L G++ ++ PSD+GR+ +  W+DE +   P 
Sbjct: 61  EGRIFLDAAKPALALLETASANLAEHRGELKGEVRLALPSDIGRSRIRYWLDELMDSAPE 120

Query: 121 VTVKLDLSDRLTDMYANPVDIAIRYGQPADSNLVAMLLCDSNERVLCASPEYLAAHPPIL 180
           ++++L   D +TD+    + +A+RYGQ  DSNL    L     RVL ASP YLA +   L
Sbjct: 121 LSIQLYFGDHMTDLIDQNIHLALRYGQLEDSNLKRRQL-SMTPRVLVASPAYLAQYGEPL 179

Query: 181 HPDDLQHHNCLCFMLADTLHNKWILSRNGETHSVVVQGNPACNDGEVVHRLAVKGKGIAN 240
             ++L  H+ L          KW  S NGE   + V+G   CNDG V+   A+ G+GIA 
Sbjct: 180 TLNELSQHSVLILNRGGEPWQKWKFSHNGEAVEIEVRGKRFCNDGAVIRDWALDGRGIAY 239

Query: 241 KSLMDISQDIIDGRLVRILPEWESGPVPIYMVCADRRLITPTIRAFQEFIREK 293
           KS +D++QD+ +GRL  +L +  + P+P+ +V       +  IR   EF+ +K
Sbjct: 240 KSWLDVAQDVTEGRLKLVLADKIAPPIPLQLVYLQTDYPSHKIRRTIEFLAQK 292