Pairwise Alignments

Query, 313 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 309 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  248 bits (633), Expect = 1e-70
 Identities = 131/301 (43%), Positives = 190/301 (63%), Gaps = 2/301 (0%)

Query: 4   LNDLNLFVETARQGSFSKAANSLSLTTAAVSAAIRRLEEQVQFPLFVRSTRHIRLTHEGE 63
           LNDL LFV  A  GS S AA  L L+ A+ SAAI+RLE+Q+   LFVR+TR +RLT +GE
Sbjct: 3   LNDLALFVRVADCGSISAAAAELELSAASASAAIKRLEKQLDTSLFVRTTRSLRLTAQGE 62

Query: 64  IFLAKTQTALATLQEGLDQIACARGQLAGQLHISAPSDLGRNLLLDWIDEFIALHPNVTV 123
            +L   + AL+ L  G   IA  +G+++G L +S  SD GRNL + W+D+F+   P + V
Sbjct: 63  RYLIHCRRALSDLALGEQAIASDKGKVSGTLSLSVSSDFGRNLFVPWLDDFLLDFPQLQV 122

Query: 124 KLDLSDRLTDMYANPVDIAIRYGQPADSNLVAMLLCDSNERVLCASPEYLAAHPPILHPD 183
           +L L D ++  Y + +D+A+RYG+P DSN VA  +C S +RVLCASP+YLA        +
Sbjct: 123 RLHLGDNISSFYHDKIDVAVRYGKPQDSNQVAFPIC-SADRVLCASPKYLAKFGQPETLE 181

Query: 184 DLQHHNCLCFMLADTLHNKWILSRNGETHSVVVQGNPACNDGEVVHRLAVKGKGIANKSL 243
            L  HNCL + L +  H++W   R+G+   V V GN + ND E+  R AV GKG+  KS 
Sbjct: 182 QLTQHNCLFYKLDERTHDQWQFERDGQECKVRVTGNRSANDAEIARRWAVAGKGLVFKSS 241

Query: 244 MDISQDIIDGRLVRILPEWESGPVPIYMVCADRRLITPTIRAFQEFIREKGCQQRRAVLT 303
           +D+++DI+ GRLV +LPE+    V +Y+VC  R  +TP +   +E +R++ C+  +  L 
Sbjct: 242 LDLAEDIMAGRLVPLLPEYRGESVNLYLVCPGREHVTPVVLLLREMLRQR-CKALQTQLA 300

Query: 304 A 304
           A
Sbjct: 301 A 301