Pairwise Alignments

Query, 346 a.a., AbrB family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 362 a.a., transmembrane protein from Sinorhizobium meliloti 1021

 Score = 81.6 bits (200), Expect = 3e-20
 Identities = 79/333 (23%), Positives = 162/333 (48%), Gaps = 30/333 (9%)

Query: 13  ILIIAAVAAGTGTLLSIPLSEMF--IASGLVIVLHKKRWLTIHTPPWLLLFVQVVLGISV 70
           + +++AV AG   ++ IP   +   + +G ++ ++     TI  P  L   VQVVL + +
Sbjct: 29  LALLSAVFAGVLEMIGIPAGLLMGPMIAGALVGMNGG---TIRLPRQLFFCVQVVLAMMI 85

Query: 71  GATISLSELGT-----TLTLPVIVGLVCCLTLQIISSYLWLTKKEGWTPFESLL-GAVPG 124
            A++S   L T      L L +I+ ++   TL       W   + G  P  + + G+  G
Sbjct: 86  AASMSPDLLVTFSGNWLLFLAIILSVIGVSTL-----CGWTITRMGILPGTTAIWGSSAG 140

Query: 125 AMAAILVISESSEKPSAKVVYSHSVRLMILTLLALLISNSAPDSASVDGSLTVYAWLIFL 184
           A + +L+++++    +  V +   +R++ +   A ++S+        + +   +A +  L
Sbjct: 141 AASTMLLMADAYGADARLVAFMQYLRVVFVASTATIVSHLWVSGVEAETATHWFAPIAGL 200

Query: 185 ALALMSLLLGKASTLLG----IPAPYMLAALLITASFNGFATGIDMQLPKWMVIFATALL 240
               M+L +G AS +LG    +PA   L    I ++ N   T + ++LP+W++  + A+L
Sbjct: 201 PF-FMTLAVGIASGILGKILRVPAGAFLVPFAIGSALNITGT-LTIELPQWLLALSFAML 258

Query: 241 GILIGSRIADTTLREAMAYSRAGVMVTMIGLLVAVGVSGVFSILIDK----SWVVLLLSW 296
           G  IG        R  +A++R  +M T++ ++V +  SG+ ++L+ K      +   L+ 
Sbjct: 259 GWNIGLGFT----RAILAHARRALMPTIVSIVVLISFSGLLALLLIKVAGIDPLTAYLAT 314

Query: 297 VPGSVEAMTAVALLLGMEPAFVMINHALRLLLL 329
            PG ++++  +A    ++  FVM     RLL++
Sbjct: 315 SPGGLDSIAVIAASSNVDLPFVMALQTARLLII 347



 Score = 57.4 bits (137), Expect = 6e-13
 Identities = 43/162 (26%), Positives = 71/162 (43%), Gaps = 3/162 (1%)

Query: 10  FIQILIIAAVAAGTGTLLSIPLSEMFIASGLVIVLHKKRWLTIHTPPWLLLFVQVVLG-- 67
           F   L +   +   G +L +P     +   +   L+    LTI  P WLL     +LG  
Sbjct: 202 FFMTLAVGIASGILGKILRVPAGAFLVPFAIGSALNITGTLTIELPQWLLALSFAMLGWN 261

Query: 68  ISVGATISLSELGTTLTLPVIVGLVCCLTLQIISSYLWLTKKEGWTPFESLLGAVPGAMA 127
           I +G T ++        +P IV +V  ++   + + L L K  G  P  + L   PG + 
Sbjct: 262 IGLGFTRAILAHARRALMPTIVSIVVLISFSGLLALL-LIKVAGIDPLTAYLATSPGGLD 320

Query: 128 AILVISESSEKPSAKVVYSHSVRLMILTLLALLISNSAPDSA 169
           +I VI+ SS      V+   + RL+I+TL+   ++    D A
Sbjct: 321 SIAVIAASSNVDLPFVMALQTARLLIITLIGPALARFVADRA 362