Pairwise Alignments

Query, 170 a.a., 23S rRNA methyltransferase from Vibrio cholerae E7946 ATCC 55056

Subject, 174 a.a., tRNA/rRNA methyltransferase (SpoU) (RefSeq) from Shewanella loihica PV-4

 Score =  189 bits (479), Expect = 3e-53
 Identities = 97/175 (55%), Positives = 124/175 (70%), Gaps = 6/175 (3%)

Query: 1   MTTSSTVIIGLHNPKSPTNVGAVMRAAGCYNATQVRYNGTRYA-----RAVKFQTDTQNS 55
           M  +S VIIGL NPKSPTNVG VMRAAGCY A +VRY G RYA     R  ++ TDT+  
Sbjct: 1   MANASKVIIGLQNPKSPTNVGGVMRAAGCYRADEVRYTGKRYALAAQHRGEQYNTDTKRV 60

Query: 56  HERIGLVEMDDLTAGLDSEVKIVCVELAVGATALPHFTHPEQAIYLFGPEDGSLPQEVVD 115
            + I L  ++ L   LD++ K++CV+L  GAT LP F+HP++AIYLFGPEDG+L Q ++D
Sbjct: 61  SQHIPLNGVESLLDSLDADTKVICVDLVEGATPLPAFSHPQKAIYLFGPEDGTLDQALID 120

Query: 116 QAHYVVYVPTHGCMNLAATVNVVLYDRLAKSLGEIDDQAQVIANRDNKNRLKVKS 170
            A  VVYVPT GCMNLA++VNV+LYDRLAK    +     + A+RD  NR+KVK+
Sbjct: 121 CADEVVYVPTVGCMNLASSVNVLLYDRLAKG-EHLSGDDLIRASRDTNNRVKVKA 174