Pairwise Alignments

Query, 784 a.a., ligand-gated channel from Vibrio cholerae E7946 ATCC 55056

Subject, 840 a.a., TonB-dependent hemin , ferrichrome receptor from Pseudomonas fluorescens FW300-N2E2

 Score = 50.8 bits (120), Expect = 3e-10
 Identities = 61/259 (23%), Positives = 99/259 (38%), Gaps = 25/259 (9%)

Query: 43  LLPVVLSSVVQAQENTEQAVDETVTVHGQSILTDQRTRSDLDKVRGIANADIFSGITSVQ 102
           L  V +S+  Q Q+ T  +V  TVTVH          R +LD+       D+      V 
Sbjct: 105 LQQVTISATRQEQDIT--SVPSTVTVHD---------RQELDRNNVNTLKDLVRYEPGVS 153

Query: 103 SNNMHNEAGALDIGIRGVQGEGRVPIFIDGSLQSTHTSRGYQGVSDRTYIDTDLLSSLTV 162
                   G     IRG+ G  R+   +DG         G    + R Y+D +++    +
Sbjct: 154 VGGAGQRGGISGYNIRGIDGN-RILTQVDGVEIPGGFFNGPYAKTQRNYVDPEIIKRAEI 212

Query: 163 NKGATIESSPYASGAVGGVVNATTLGIKDIIKDDQAFGVVLKARANNHN----RTPDVSG 218
            +G    S  Y S A+GG V+  TL   DIIK  +  G  LK   ++ +    ++  V+G
Sbjct: 213 LRGPA--SVLYGSNAIGGAVSYFTLDPNDIIKPGEDVGARLKTGYSSADESWLKSATVAG 270

Query: 219 DYSE-QGQYALDERGEHSAFKHGSLMLGLGYQAESFNTVLAYSKRSKGNHFAGKKGYEEY 277
              +  G     +R  H    +GS      +     +   A  +  + N+   K G+   
Sbjct: 271 RSGQFDGLLHYSQRDGHETESYGS------HNGTGLDRTAANPEDVRANNVLAKLGWNYS 324

Query: 278 QEPVVGQGQEVVNTSFESD 296
            +  +G   E      +SD
Sbjct: 325 DDARLGLVYEKYKDDRDSD 343