Pairwise Alignments

Query, 784 a.a., ligand-gated channel from Vibrio cholerae E7946 ATCC 55056

Subject, 854 a.a., TonB-dependent receptor from Pseudomonas fluorescens FW300-N2E3

 Score = 53.1 bits (126), Expect = 6e-11
 Identities = 51/192 (26%), Positives = 77/192 (40%), Gaps = 17/192 (8%)

Query: 55  QENTEQAVDETVTVHGQSILTDQRTRSDLDKVRGIANADIFSGITSVQSNNMHNEAGALD 114
           QE +  +V  TVTVH         TR +LD        ++      V         G   
Sbjct: 137 QEQSVDSVPSTVTVH---------TREELDHDNVNTIKELVRYEPGVSVGGTGTRGGISG 187

Query: 115 IGIRGVQGEGRVPIFIDGSLQSTHTSRGYQGVSDRTYIDTDLLSSLTVNKGATIESSPYA 174
             IRG+ G+ RV   +DG         G    + R Y+D +++  + + +G    S  Y 
Sbjct: 188 YNIRGIDGD-RVLTQVDGVEVPNGFFNGPYAKTQRNYVDPEIIKRVEILRGPA--SVLYG 244

Query: 175 SGAVGGVVNATTLGIKDIIKDDQAFGVVLKARANNHN----RTPDVSGDYSE-QGQYALD 229
           S A+GG V+  TL   DIIK  +  G  LK   N+ +    ++  V+G   +  G     
Sbjct: 245 SNAIGGAVSYFTLDPNDIIKPGKDVGARLKTGYNSADDSWLKSASVAGRAEQFDGLLHFS 304

Query: 230 ERGEHSAFKHGS 241
           +R  H     GS
Sbjct: 305 QRDGHETESFGS 316