Pairwise Alignments

Query, 784 a.a., ligand-gated channel from Vibrio cholerae E7946 ATCC 55056

Subject, 779 a.a., TonB-dependent hemoglobin/transferrin/lactoferrin family receptor from Rhodopseudomonas palustris CGA009

 Score = 94.0 bits (232), Expect = 3e-23
 Identities = 164/778 (21%), Positives = 290/778 (37%), Gaps = 157/778 (20%)

Query: 52  VQAQENTEQAVDETVTVHGQSILTDQRTRSDLDKVRGIANADIFSGITSVQSNNMHNEAG 111
           V A +N E+A+D        S +T Q+    + +       D+F     V   +  +E  
Sbjct: 79  VVATKNEEKAIDALAPA---SAITLQQ----IQQFPPSRLQDVFVATPGVSFQDRGDEPS 131

Query: 112 ALDIGIRGVQGEGRVPIFIDGSLQSTHTSRGYQGVSDRTYIDTDLLSSLTVNKGATIESS 171
              I IRG+Q  GRV + +DG+ Q+    R   G     ++D +L+  + V +G +  ++
Sbjct: 132 T-SINIRGLQDFGRVAVVVDGARQNYQ--RSGHGAQGSFFLDPELIGGIDVVRGPS--AN 186

Query: 172 PYASGAVGGVVNATTLGIKDIIKDDQAFGVVLKARANNHNRTPDVSGDYSEQGQYALDER 231
            Y SGA+GGVV+  T  I D+++  + +GV             D+SG Y           
Sbjct: 187 IYGSGAIGGVVSFRTKDIDDVVRAGERWGV-------------DLSGSY----------- 222

Query: 232 GEHSAFKHGSLMLGLGYQAESFNTVLAYSKRSKGNHFAGKKGYEEYQEPVVGQGQEVVNT 291
           G ++A   GS+  G+     S +       R++GN          Y++   G G E+ NT
Sbjct: 223 GSNNARGLGSVFGGVRVDP-SVDVFGGAVYRTQGN----------YKD---GAGTEIGNT 268

Query: 292 SFESDSWLFKLASDTGTAHNADFNYRHHAQKAGEVLMAYWYKSSEDWEGNPYPDGKDRMP 351
             +  + L K      T   AD     H  K G +   + Y   +   G      +  + 
Sbjct: 269 GNDLAAGLMKF-----TVRPAD----GHEVKIGGIFQDFNYDVGQFNRG----PSQQALY 315

Query: 352 QWGLGTAKVNTYSANY-------YYQPDHPWLNLNANFWYTEADLAQ------------Y 392
           Q   G++  +T   NY       Y QPD  W + + N +    +  Q            Y
Sbjct: 316 Q---GSSVYSTSLQNYTGTLSWKYSQPDDTWFDWSVNLYGNRTNSDQTKTYHYSTSGSGY 372

Query: 393 NGLWALGTNAEQYF---HAYHNDRSGLSLTNETLLT--QWPVRLNYGLAQQNERLSPEED 447
            G    G N          Y+ D  G+   N +      W + + YG+   N++++  + 
Sbjct: 373 CGAGNYGNNISGCIGDKRGYNLDTVGIDANNTSRFEYGNWRIAVTYGVDVFNDKVTTWD- 431

Query: 448 GQTRFTKTVTSRHGKRTAQNLFANADIDYSPLRVQLGLNLHNAKSTDYQTKQQLDYKEKL 507
             +R    +T+  G+RT    F     +Y+     +G     A+   Y+           
Sbjct: 432 --SRGNSNITTPGGERTVSGGFIQVKNNYAQWLEVIGA----ARYDHYELNSNSSTASGS 485

Query: 508 DLLSEFTYALTPSTQL--FLKSSRTYRMPSLYETTLSNE------------------VFS 547
            L  + T  LTP      ++  +  YR PS+ ET ++                    +F 
Sbjct: 486 RLSPKVTLGLTPIAGFTPYVAYAEGYRAPSITETLIAGAHATGGGPALFTCADGTSGLFC 545

Query: 548 YNPYNPIKPEQAWNNEVGVQFMASNSVLQDDRLNLSVSYFRNSIKDFI----SGGRLAKT 603
             P   ++PE   N EVG+    ++  +  D     ++ FRN + ++I    S  +  +T
Sbjct: 546 LIPNTALRPEVGKNKEVGINLKYNDVFISGDSFRGKINAFRNDVDNYIELLGSTPQAYRT 605

Query: 604 -----PGMSEWQANFTFTNYDKLQLSGWELGAHYQYAWLYTHFAATLYSETKICSVQQAQ 658
                P        + + N    ++ G E+   Y     +    A +   T         
Sbjct: 606 VFMGFPVSGVASKYYQYQNIPHARIEGVEVETSYDAGMWFVGVNAAVIRGT--------- 656

Query: 659 YAESDTCNSLGFAWGLTPTRIPPKQNLYLNVGTKFFNDTLDSGVK-VSYHSGKSNPSDWL 717
               DT        GL    +P ++ +    G +  +  L    +  SY +  + P+ +L
Sbjct: 657 --NPDT--------GLGLVSVPARK-VVTTGGLRLLDRQLTIAAQWASYAANTNLPTGYL 705

Query: 718 AGTAANPILEIPSDYTIDLYSQYELNANTQLFFAINNVTDRYQVRPGSVVSMPDPGRT 775
            GT+ +          ++L   Y   A+  L F+I+N+ + Y  RP ++      G T
Sbjct: 706 PGTSYD---------LVNLNIAYRPTADVTLNFSIDNLLNNY-YRPYAIPGSSSDGTT 753