Pairwise Alignments

Query, 784 a.a., ligand-gated channel from Vibrio cholerae E7946 ATCC 55056

Subject, 697 a.a., heme transport protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 81.3 bits (199), Expect = 2e-19
 Identities = 177/794 (22%), Positives = 292/794 (36%), Gaps = 153/794 (19%)

Query: 35  MQLKPLFTLLPVVLSSVVQA--------------QENTEQAVDET------VTVHGQSIL 74
           M  KPL   + + LSS   +              Q++ EQ V ET      V+    S  
Sbjct: 1   MNKKPLVIAVAMALSSTALSFALAAEEGVKPTAVQKSAEQGVVETEFDEVLVSATRLSEK 60

Query: 75  TDQRTRSDLDKVRGIANADIFSGITSVQSN----NMHNEAGALDIG--IRGVQGEGRVPI 128
             + +RS         N    S +  V  N    N+ N   A   G  IRG+ G+ RV  
Sbjct: 61  VSETSRSVAVVAEEQLNVSQASSVAEVLKNEANINLTNGPRATSQGVEIRGLSGD-RVLQ 119

Query: 129 FIDGSLQSTHTSRGYQGVSDRTYIDTDLLSSLTVNKGATIESSPYASGAVGGVVNATTLG 188
            IDG+ Q+T  S G++G     ++D +LL S+ V +G    SS + SGA+GGVV   T  
Sbjct: 120 TIDGARQNT--SSGHRG---SYFMDPELLKSIEVIRGPA--SSLWGSGALGGVVAQNTKS 172

Query: 189 IKDIIKDDQAFGVVLK-ARANNHNRTPDVSGDYSEQGQYALDERGEHSAFKHGSLMLGLG 247
            +D +  ++ FG  LK     N +RT      Y +Q                  L+ G  
Sbjct: 173 AQDFLAPNETFGGYLKQGYDTNGDRTKTSGAVYGQQATV-------------DWLLNGSY 219

Query: 248 YQAESFNTVLAYSKRSKGNHFAGKKGYEEYQEPVVGQGQEVVNTSFESDSWLFKLASDTG 307
           + + + NT                           G  + +VN++    S L K      
Sbjct: 220 FDSNNINT---------------------------GNDETLVNSASSGSSGLAKFGWQAD 252

Query: 308 TAHNADFNYRHHAQKAGEVLMAYWYKSSEDWEGNPYPDGKDRMPQWGLGTAKVNTYSANY 367
            A                 L A   K +E    NP       +P     T   N  + NY
Sbjct: 253 EASRL-------------ALSARVNKINELVPSNPSAAVSSSVPLVRRKTDDQN-ITLNY 298

Query: 368 YYQP-DHPWLNLNANFWYTEADLAQYNGLWALGTNAEQYFHAYHNDRSGLSLTNETLLTQ 426
              P ++P+L+ +   ++   D  +        T  +     Y     G++L N + L  
Sbjct: 299 SLAPANNPYLDTHLQVYWNSTDYDEDR-----VTKGQLDSTEYRT--VGINLNNSSQLGN 351

Query: 427 WPVRLNYGLAQQNERLSPEEDGQTRFTKTVTSRHGKRTAQNLFANADIDYS-PLRVQLGL 485
              +L YG+    + L    D + +  +      G+ T    F  AD+  +  + +   L
Sbjct: 352 --TKLTYGVDGYRDTLKTVRDDKGQVGQRPEDIDGETTVWGAFTRADVQLTQTVNLDAAL 409

Query: 486 NLHNAKSTDYQTKQQLDYKEKLDLLSEFTYALTPSTQLFLKSSRTYRMPSLYETTLSNEV 545
              + K+  +      D  E    L   ++   P   L  +  + +R P++ E   S   
Sbjct: 410 RYDSFKNQSHNLNASADDTELSPSLG-LSWQTQPWLTLSARYDQAFRAPTVEEMFSSGTH 468

Query: 546 FSYNPY--------------NP-IKPEQAWNNEVGVQFMASNSVLQDDRLNLSVSYFRNS 590
           +   P               NP +K E A N E+   F   N +  DD L ++++ FRN 
Sbjct: 469 YCIPPIPGFLPKGLCNTFATNPNLKSEVARNKELKADF-RFNELAGDDELAITLNIFRND 527

Query: 591 IKDFISGGRLAKTPGMSEWQANFTFTNYDKLQLSGWELGAHYQYAWLYTHFAATLYSETK 650
           + DFI         G+   +   ++ N +  QL+G+EL   Y+     T  A   Y +T+
Sbjct: 528 VDDFIVQQVSNPYRGIPGLEQTTSWNNVEDAQLTGFELSGRYRIG--QTRLAMN-YGQTR 584

Query: 651 ICSVQQAQYAESDTCNSLGFAWGLTPTRIPPKQNLYLNVGTKFFNDTLDSGVKVSYHSGK 710
                   Y E    N               K N+ L+ G       +  G +V+Y + +
Sbjct: 585 GEDRNTGDYIEGMPAN---------------KFNVDLSQG--IMEGDMKLGTRVTYVASQ 627

Query: 711 SNPSDWLAGTAANPILEIPSDYTI-DLYSQYE----LNANTQLFFAINNVTD-RYQVRPG 764
           +N       T     +    +YT+ D+Y  +E    + +  ++ FAI N+ D +YQ    
Sbjct: 628 TN-------TPTGYSVAKYDEYTLWDVYLAWEPAMGVMSGLRVDFAIENIGDEKYQ---Q 677

Query: 765 SVVSMPDPGRTITL 778
           +  ++  PGR + L
Sbjct: 678 AWQTLYQPGRNMKL 691