Pairwise Alignments

Query, 784 a.a., ligand-gated channel from Vibrio cholerae E7946 ATCC 55056

Subject, 695 a.a., TonB-dependent heme/hemoglobin receptor family protein (RefSeq) from Shewanella sp. ANA-3

 Score = 84.3 bits (207), Expect = 2e-20
 Identities = 161/738 (21%), Positives = 276/738 (37%), Gaps = 135/738 (18%)

Query: 47  VLSSVVQAQENTEQAVDETVTVHGQSILTDQRTRSDLDKVRGIANADIFSGITSVQSNNM 106
           VL S  +  E   Q    +V V  +  L   +  S  + ++  AN  + +G         
Sbjct: 48  VLVSATRLSEKVSQT-SRSVAVVSEEQLNVAQASSVAEALKNEANITLTNG--------- 97

Query: 107 HNEAGALDIGIRGVQGEGRVPIFIDGSLQSTHTSRGYQGVSDRTYIDTDLLSSLTVNKGA 166
              A +  + IRG+ G+ RV   IDG+ Q+T  S G++G     ++D +LL S+ V +G 
Sbjct: 98  -PRATSQGVEIRGLSGD-RVLQTIDGARQNT--SSGHRG---SYFMDPELLKSIEVIRGP 150

Query: 167 TIESSPYASGAVGGVVNATTLGIKDIIKDDQAFGVVLKARAN-NHNRTPDVSGDYSEQGQ 225
              SS + SGA+GGVV   T   +D +  ++ FG  LK   + N +RT   +  Y +Q  
Sbjct: 151 A--SSLWGSGAIGGVVAQNTKSAQDFLAPNETFGGYLKQGYDTNGDRTKTSAAVYGQQDT 208

Query: 226 YALDERGEHSAFKHGSLMLGLGYQAESFNTVLAYSKRSKGNHFAGKKGYEEYQEPVVGQG 285
                           L+ G  + + + NT                           G  
Sbjct: 209 IDW-------------LINGSYFDSNNINT---------------------------GND 228

Query: 286 QEVVNTSFESDSWLFKLASDTGTAHNADFNYRHHAQKAGEVLMAYWYKSSEDWEGNPYPD 345
           + + N++    S L K       A   + + R +             K +E    NP   
Sbjct: 229 ETLTNSASLGSSGLAKFGWQADEASRLELSARVN-------------KINELVPSNPSAA 275

Query: 346 GKDRMPQWGLGTAKVNTYSANYYYQP-DHPWLNLNANFWYTEADLAQYNGLWALGTNAEQ 404
               +P     T   N  + NY   P ++P+L+     ++   D  +           + 
Sbjct: 276 VSSSVPLVRRKTDDQNV-TLNYSLAPANNPYLDTKVQVYWNSTDYDE-------DRVTKG 327

Query: 405 YFHAYHNDRSGLSLTNETLLTQWPVRLNYGLAQQNERLSPEEDGQTRFTKTVTSRHGKRT 464
            F +      G++L N + L     +L YG+    + L    D + +  +      G+ T
Sbjct: 328 QFDSTEYRTIGINLNNSSQLGN--TKLTYGVDGYRDTLKTVRDDRGQVGQRPGDIDGETT 385

Query: 465 AQNLFANADIDYSP-LRVQLGLNLHNAKSTDYQTKQQLDYKEKLDLLSEFTYALTPSTQL 523
               F  ADI  +  + +   L   + K+  +      D  E    L   ++   P   L
Sbjct: 386 VWGAFTRADIQLTQTVNLDAALRYDSFKNESHNLNASADDNELSPSLG-LSWQTQPWLTL 444

Query: 524 FLKSSRTYRMPSLYETTLSNEVFSYNPY--------------NP-IKPEQAWNNEVGVQF 568
             +  + +R P++ E   +   +   P               NP +K E A N E+   F
Sbjct: 445 SARYDQAFRAPTVEEMFSTGTHYCIPPIPGFLPQGLCNTFATNPNLKSEVARNKELKADF 504

Query: 569 MASNSVLQDDRLNLSVSYFRNSIKDFISGGRLAKTPGMSEWQANFTFTNYDKLQLSGWEL 628
             +N +  DD L  +V+ FRN + DFI         G+  ++   ++ N +  QL+G+EL
Sbjct: 505 RFNN-LAGDDELAFTVNIFRNDVDDFIVQQVSNPLMGIPGFEQTTSWNNVEDAQLTGFEL 563

Query: 629 GAHYQYAWLYTHFAATLYSETKICSVQQAQYAESDTCNSLGFAWGLTPTRIPPKQNLYLN 688
              Y+     T  A   Y +T+    +   Y E    N               K N+ L+
Sbjct: 564 SGRYRIG--QTRLAMN-YGQTRGEDRKTGDYIEGMPAN---------------KFNVDLS 605

Query: 689 VGTKFFNDTLDSGVKVSYHSGKSNPSDWLAGTAANPILEIPSDYTI-DLYSQYE----LN 743
            G       +  G +V+Y + +SN       T     +    DYT+ D+Y  +E      
Sbjct: 606 QG--IMEGDMKLGTRVTYVASQSN-------TPEGYRVAKYDDYTLWDVYLAWEPAMGAM 656

Query: 744 ANTQLFFAINNVTD-RYQ 760
           +  ++ FAI N+ D +YQ
Sbjct: 657 SGLRVDFAIENIGDEKYQ 674