Pairwise Alignments

Query, 592 a.a., putative 2-aminoethylphosphonate ABC transporter permease subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 301 a.a., polyamine ABC transporter, permease protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 69.3 bits (168), Expect = 2e-16
 Identities = 61/282 (21%), Positives = 129/282 (45%), Gaps = 13/282 (4%)

Query: 20  MRLKEKSMLNVARTFSVRILPHWSRDSLILSTTLLILLSLMLLFIVAPLAAMLLKSVQNG 79
           M++K K      R +++     W      L   ++  +SL    I  P      +   + 
Sbjct: 1   MKIKSKLKWLKGRFWTISFPYAWLLLFFALPFAIVFKISLSTAAIAIPPYEATFQYADDV 60

Query: 80  QGEFVGLAYFAQYFSSAALWQSLRNTLVLGISVTAIVGILAFGY--AYALTRSCMPGKHL 137
              F+ L  +         + +  ++L + +  T  +G L  GY  AYA+ R+    + +
Sbjct: 61  LNIFLHLGNYLMLLDDPLYYTAYLSSLKMALVST--IGCLIIGYPMAYAIARAPARWQTV 118

Query: 138 FRVLGSAPILAPSLLPAISLIFLFGNQGMLKS---WLGGES-----IYGGLGITLGLIFW 189
             +L   P     L+   + + +  N G++ +   WLG  S     +   + + +G+I+ 
Sbjct: 119 LLLLVMLPSWTSFLIRVYAWMGILSNTGIINNSLMWLGIISEPLQILNTNIAVYIGIIYA 178

Query: 190 TFPHALMILTTSLSTSDARLYEAARALKTSPIKTFFIVTLPAAKYGLISALIVVFTLVVC 249
             P  ++ L  +L   D  L EAA  L +S I TF+ +T P +K G+I+  ++VF   V 
Sbjct: 179 YLPFMILPLYATLVKLDMSLIEAASDLGSSRINTFWKITFPLSKSGVIAGSMLVFIPAVG 238

Query: 250 DFGVPKVIGGSYNVLATDI-FKQVVGQQNFAMGAVTSIVLLL 290
           +F +P+++GG  +++   + +++    +++ + +  +IV+L+
Sbjct: 239 EFVIPELLGGPDSLMIGKVLWQEFFNNRDWPVASSLAIVMLV 280



 Score = 31.2 bits (69), Expect = 6e-05
 Identities = 39/179 (21%), Positives = 72/179 (40%), Gaps = 16/179 (8%)

Query: 359 NTALTLKHYQFAETSAYGWSPYFNSLTLASLTALCGTVIIFLGAYSIEKGRVFALLRQAM 418
           N  L L +Y         ++ Y +SL +A ++ +   +I +  AY+I   R  A  +  +
Sbjct: 62  NIFLHLGNYLMLLDDPLYYTAYLSSLKMALVSTIGCLIIGYPMAYAI--ARAPARWQTVL 119

Query: 419 QMLSMVPM---------AVPGLVLGLGYI----FFFNHASNPLNGLYGGMLLLVINTVVH 465
            +L M+P          A  G++   G I     +    S PL  +    + + I  +  
Sbjct: 120 LLLVMLPSWTSFLIRVYAWMGILSNTGIINNSLMWLGIISEPLQ-ILNTNIAVYIGIIYA 178

Query: 466 YYTVGHMTAVTALKQLPPELEATAASIKLPQYRLLWKVTLPVSLPAVLDIASYLFINAL 524
           Y     +     L +L   L   A+ +   +    WK+T P+S   V+  +  +FI A+
Sbjct: 179 YLPFMILPLYATLVKLDMSLIEAASDLGSSRINTFWKITFPLSKSGVIAGSMLVFIPAV 237