Pairwise Alignments

Query, 301 a.a., multidrug transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 299 a.a., Protein of unknown function DUF6, transmembrane (NCBI) from Rhodospirillum rubrum S1H

 Score =  102 bits (255), Expect = 8e-27
 Identities = 85/313 (27%), Positives = 137/313 (43%), Gaps = 45/313 (14%)

Query: 1   MSFMPIILVLFSALLHAGWNIIGKRYQSSGPSFFLGATSATSLLLTPYIVWYFTK--IGW 58
           +S   ++LV+ +A++HA WN++ KR  S+GP+F    T    L   P+ +W   +  + W
Sbjct: 10  VSCFALVLVVLAAVIHASWNLLSKRAASAGPTFVFAYTFTACLAYAPWALWLIAQGAVAW 69

Query: 59  STLPTQFWLLLVVSGLSQMVYMLGLAFAYSKVDIGIAYPLARGL-PVLLVGAGTVMLGYD 117
           S         L++SG+  + Y L L   Y   D+ + YP+ARG  P+L V A  V LG  
Sbjct: 70  SASVVG---CLLISGIVHLGYSLCLQRGYQVADLSVVYPVARGTGPLLAVLAAIVFLGEQ 126

Query: 118 LQLNQWLGFALITLGCLMIPLQ-KFRQFRFADYANLGIVWALVAALGTAGYSIIDKEALA 176
             L    G   +  G  +I  Q +   FR     + G++W L      A Y+++D     
Sbjct: 127 PSLRGVFGLIAVVGGIALISTQGRLAAFR-KPGGSSGVLWGLATGGLIASYTVVDA---- 181

Query: 177 IIEQTVGSQMPASYSAVLYLGIQFWAMCIPLAIWYLLTGQR----APFVEAWRIRYTATL 232
                           V+ LGI       P+ + +   G R    AP + A   R    +
Sbjct: 182 --------------YGVMTLGI------APVVLDWFANGARVVLLAPLIAANPRRAREAM 221

Query: 233 A---------GLMMGGTYSLVLYAMTLTENVSFIVALRQTSIVFGLFMGIAFLGERWYVT 283
           A         GL+   +Y LVL A+ +   +S    LR+ S++ G  +G+  L ER    
Sbjct: 222 AGKWPLAIGVGLLSPLSYILVLAALDIGAPLSIAAPLREMSMMVGALLGMVLLKERVGAW 281

Query: 284 RLLGVSAIVAGLV 296
           R  G + ++ G+V
Sbjct: 282 RFGGCAVLLCGVV 294



 Score = 29.6 bits (65), Expect = 9e-05
 Identities = 33/150 (22%), Positives = 66/150 (44%), Gaps = 26/150 (17%)

Query: 154 IVWALVAALGTAGYSIIDKEALAIIEQTVGSQMPASYSAVLYLGIQFWAMCIPLAIWYLL 213
           +V  ++AA+  A ++++ K A +      G     +Y+    L    WA+      W + 
Sbjct: 15  LVLVVLAAVIHASWNLLSKRAAS-----AGPTFVFAYTFTACLAYAPWAL------WLIA 63

Query: 214 TGQRAPFVEAWRIRYTATLAG-LMMGGT----YSLVLYAMTLTENVSFIVAL-RQTSIVF 267
            G          + ++A++ G L++ G     YSL L       ++S +  + R T  + 
Sbjct: 64  QGA---------VAWSASVVGCLLISGIVHLGYSLCLQRGYQVADLSVVYPVARGTGPLL 114

Query: 268 GLFMGIAFLGERWYVTRLLGVSAIVAGLVV 297
            +   I FLGE+  +  + G+ A+V G+ +
Sbjct: 115 AVLAAIVFLGEQPSLRGVFGLIAVVGGIAL 144