Pairwise Alignments

Query, 490 a.a., MFS transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 516 a.a., proton-dependent oligopeptide transporter (POT) family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  153 bits (387), Expect = 1e-41
 Identities = 115/487 (23%), Positives = 233/487 (47%), Gaps = 24/487 (4%)

Query: 20  FYGVMVILTRFFLEDLNYSEADTMMVVGAFSSIGPLFAIAGGFIADKFLGAYRSLAISYV 79
           +YG+  ++  F ++ L + ++   +V  A +++  +    GG++ DK LG  R++ +   
Sbjct: 28  YYGMQALIVYFMVQRLGFDDSRANLVWSACAALIYVSPAIGGWVGDKILGTKRTMLLGAG 87

Query: 80  TFAIGYALLVLGASSTHVPLSLVGIALASYARGLMSPSYPSLYKRTFASEED-FNNGYPV 138
             ++GYAL+ +   +T    S +G+ +     GL  P+  +L ++ +  ++   ++ + +
Sbjct: 88  ILSVGYALMTVPTENTWFMFSALGVIVV--GNGLFKPNAGNLVRKIYEGDDSKIDSAFTI 145

Query: 139 NYSVNNVGALLGQYLFPMLVLLL--------GFHGSFALSALMATLATITLVVMRRPLIE 190
            Y   NVG+     L P +   +        G+H +FA+  +   +      +M + L  
Sbjct: 146 YYMAVNVGSTFSMLLTPWIKDYVNAQYGNEFGWHAAFAVCCVGILVGLGNYALMHKSLAN 205

Query: 191 VASEKDQQSVSMGNWIAFTLLSLAMVGLVFFMFSNMVIGQNIVYAIGLAAIVYFINLMLK 250
             SE D + V+  +      L+   V     +     + +  VYA G+A +  F +L+  
Sbjct: 206 YGSEPDTRPVNKKSLAIVLALAALSVVASAIILEYEDVARVFVYAAGVAVLGIFFHLIRT 265

Query: 251 ARRAEALKMGTILIVTVLTTCFFVYYGQMMTSMTMVTINTMRG--ELFG--IIPIAPEAS 306
           +  +E   +   LI+TV T  FF++Y QM TS+ +  +  +    ++FG  +   +P   
Sbjct: 266 SEPSERAGLIAALILTVQTVFFFIFYQQMSTSLALFALRNVDWDFQVFGTHLWTWSPAQF 325

Query: 307 MAMNPLWCIVAGPVISYLFPTLEKRGITFSTATKIAFAFVLTAISFGILTFAVSTVGEEA 366
            A+NP+W +V  PV+++ +    +    FS A K A  F + AI F I  FA    G+ A
Sbjct: 326 QALNPIWIMVLSPVLAWSYSWAGRNNKDFSIAAKFALGFAVVAIGFFIYGFA----GQFA 381

Query: 367 II-RPEVFLVIHFFQAFA--EVVVGSLVVAFILSVAPKQIENFSVSLFYIAMALSGIIGA 423
           +  +   +++I  + +++  E++V  L +A I    P ++  F +  +++A  +S  +G 
Sbjct: 382 VNGKTSSWVMIWGYASYSLGELLVSGLGLAMIARYVPARMGGFMMGAYFVASGISQYLGG 441

Query: 424 VFSTSIALEKGQVVTQQIVQIIYGDYFKLLTVLAVVMVGVALLASVLIRKMLAAADVNSP 483
           V +   ++ +  V   Q +  +Y + F  L V AVV   +AL    L+R++  +   +S 
Sbjct: 442 VVANFASVPQDLVDPLQTLP-VYTNLFNKLGVAAVVCTIIALAVLPLMRRLTESHHAHS- 499

Query: 484 SIQDKQA 490
           SI++  A
Sbjct: 500 SIENNAA 506