Pairwise Alignments

Query, 490 a.a., MFS transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 516 a.a., proton/peptide symporter family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 79.7 bits (195), Expect = 2e-19
 Identities = 102/474 (21%), Positives = 204/474 (43%), Gaps = 74/474 (15%)

Query: 19  SFYGVMVILTRFFLEDLNYSEADTM-----------MVVGAFSSIGPLFAIAGGFIADKF 67
           SFYG+  ILT F +  L  S  + +            V+G +      F + GG+IAD+F
Sbjct: 27  SFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVY-----FFPLLGGWIADRF 81

Query: 68  LGAYRSLAISYVTFAIGYALLVLGASSTHVPLSLVGIALASYARGLMSPSYPSLYKRTF- 126
            G Y ++    + + +G+A L +   S  V     G+ L +   G + P   S     F 
Sbjct: 82  FGKYNTILWLSLIYCVGHAFLAIFEHS--VQGFYTGLFLIALGSGGIKPLVSSFMGDQFD 139

Query: 127 -ASEEDFNNGYPVNYSVNNVGALLGQYLFPMLVLLLGFHGSFALSALMATLATITLVVMR 185
            +++      + + Y   N G+       P+L+   G   +F +  ++  +AT+   + R
Sbjct: 140 QSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGR 199

Query: 186 RPLIEVASE-KDQQ------------------------SVSMGNWIAFTLLSLAMVGLVF 220
           +  I +  E KD                          ++  G   A+ L+++  +G+V 
Sbjct: 200 KRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVA 259

Query: 221 FMFSNMVIGQNIVYAIGLAAIVYFINLMLKARRA--EALKMGT-----ILIVTVLTTCFF 273
            +   MV+   ++  +G  A +     + +AR++  +A   G      IL++  L T F+
Sbjct: 260 GLCCAMVL---VMGFVGAGASLQ----LERARKSHPDAAVDGVRSVLRILVLFALVTPFW 312

Query: 274 VYYGQMMTSMTMVTINTMRGELFGIIPIAPEASMAMNPLWCIVAGPVISY-LFPTLEKRG 332
             + Q  ++  +   + ++ + F      P    A+NPL  ++  P  ++ L+P +E+ G
Sbjct: 313 SLFDQKASTWILQANDMVKPQWF-----EPAMMQALNPLLVMLLIPFNNFVLYPAIERMG 367

Query: 333 ITFSTATKIAFAFVLTAISFGIL-TFAVSTVGEEAIIRPEVFLVI--HFFQAFAEVVVGS 389
           +  +   K+     +T +S+ ++ T  +   G  A+    +F  I  +    F EV+V +
Sbjct: 368 VKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSAL---SIFWQILPYALLTFGEVLVSA 424

Query: 390 LVVAFILSVAPKQIENFSVSLFYIAMALSGIIGAVFSTSIALEKGQVVTQQIVQ 443
             + F  S APK ++   +S + +++ +  +   + + S+   K   VT+QIVQ
Sbjct: 425 TGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSV---KSPTVTEQIVQ 475