Pairwise Alignments

Query, 490 a.a., MFS transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 514 a.a., di-tripeptide ABC transporter (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 97.1 bits (240), Expect = 1e-24
 Identities = 104/500 (20%), Positives = 207/500 (41%), Gaps = 60/500 (12%)

Query: 19  SFYGVMVILTRFFLEDLNYSEADTMMVVGAFSSIGPLFAIAGGFIADKFLGAYRSLAISY 78
           S+YG+  I   F  + L + +     + G+++ +  L  + GG+IADK+ G  RS+    
Sbjct: 24  SYYGMRAIFILFLTQALLFDKEAAASIYGSYTGLVYLTPLIGGYIADKYWGIRRSVFWGA 83

Query: 79  VTFAIGYALLVLGASSTHVP-----LSLVGIALASYARGLMSPSYPSLYKRTFASEEDFN 133
           V  A+G  L+ + ASS +       L   G+       G   P+  SL  + +   E  +
Sbjct: 84  VMMAVGQFLMFMSASSLNNTDLAHWLMYGGLGFMILGNGCFKPTVSSLVGQLY---EPGD 140

Query: 134 NGYPVNYSVNNVGALLGQYLFPMLVLLLG-------FHGSFALSALMATLATITLVVMRR 186
                 Y++  +G  +G +  P++   LG       F   F  S +M     +     + 
Sbjct: 141 KRLDAAYTIFYMGVNVGSFAAPLICGFLGDTGNPQDFKWGFLASGIMTLFTVVLFETQKN 200

Query: 187 PLI------------------------EVASEKDQQSVSMGNWIAFTLLSLAMVGLVFFM 222
             +                         ++  K  +   + N I  T L++A++    + 
Sbjct: 201 KYLFSPSGEPIGIVPDARREKKEDKAEHISHPKMDKRTKVRNIIIITALTVALIAFFSYA 260

Query: 223 FSNMVIGQNIVYAIGLAAIVYFINLMLKAR--RAEALKMGTILIVTVLTTCFFVYYGQMM 280
           FS+  I   I      A IV+ + ++L     + E  ++  I IV      F+  Y Q  
Sbjct: 261 FSDDWISVGIF----TACIVFPVLILLDGSLTKVERSRIFVIYIVAFFVIFFWAAYEQAG 316

Query: 281 TSMTMVTINTMRGELFGIIPIAPEASMAMNPLWCIVAGPVISYLFPTLEKRGITFSTATK 340
            S+T+         +FG   +      + NPL+ ++   ++  ++  L KR +  ++ TK
Sbjct: 317 ASLTLFASEQTDRSIFG-WEMPASWFQSFNPLFVVILAYIMPGIWGFLNKRNMEPASPTK 375

Query: 341 IAFAFVLTAISFGILTFAVSTVGEEAIIRPEVFLV----IHFFQAFAEVVVGSLVVAFIL 396
            A   +L ++ +  + F V    ++AI   +V ++    ++F     E+ +  + ++ + 
Sbjct: 376 QAIGLLLLSLGYLFICFGV----KDAIPGVKVSMIWLTGLYFIHTMGEIALSPIGLSMVN 431

Query: 397 SVAPKQIENFSVSLFYIAMALSGIIGAVFSTSIALEKGQVVTQQIVQI-IYGDYFKLLTV 455
            ++P +  +  + ++Y++ A +     + S  +  E G+V +    QI    D+F    +
Sbjct: 432 KLSPLRFASLMMGIWYLSTATANKFAGMLS-GLYPEDGKVKSILGYQIATMYDFF----M 486

Query: 456 LAVVMVGVALLASVLIRKML 475
           L V+M GVA L   L+ K L
Sbjct: 487 LFVIMSGVASLILFLLSKKL 506