Pairwise Alignments

Query, 611 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 604 a.a., Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) from Pseudomonas fluorescens FW300-N2E2

 Score =  458 bits (1179), Expect = e-133
 Identities = 252/598 (42%), Positives = 351/598 (58%), Gaps = 20/598 (3%)

Query: 17  VTLALSSQFSWAAVIETTRLVGFGEAKYPENFTHFDYVNPQAPKYGKVTFGELGTYDNFN 76
           ++LALSS  S A + E+     FG  KYP  FTHFD+VNPQAPK G +     GT+D  N
Sbjct: 4   ISLALSSPAS-ATISESHGYAQFGTLKYPARFTHFDWVNPQAPKGGVLRVMAFGTFDTLN 62

Query: 77  RFASRGVAAANTA--------ELYDPLM-----FSPA-DEIDSYYPLIASKIRYSDDFTW 122
            +  +G +  +T         EL +PLM     ++P+ DE  S Y LIA  + YS+D +W
Sbjct: 63  PYTFKGSSPVSTPNFLQYGINELNEPLMVGTGQYAPSGDEPTSSYGLIAQSVEYSEDRSW 122

Query: 123 LEIDLNPNARFHDGKPITAQDVEFSFEKFMAEGVPQYRVYYQDVKSVKAIAERTVRIEMK 182
           +  +L P ARFHDG PITA DV FS+   + EG PQYR   Q+V  V  +    +R   K
Sbjct: 123 VVFNLRPEARFHDGVPITAYDVAFSYRTLLKEGHPQYRTNLQEVLRVDILNPLRIRFVFK 182

Query: 183 QPNREQLFSLAQSTRVLPKHYWQYKNLAEPLNEPPVGSGAYQIVDFKPGQSVTYKLNPDY 242
           +     L        VLP+HYW+ ++      EPP+GSG Y+I   +PG+ + ++   DY
Sbjct: 183 RAGNPLLILRLGELPVLPQHYWKDRDFKATTFEPPLGSGPYRITKVQPGRQLVFERVKDY 242

Query: 243 WAKDLPVNVGRNNFAQIQYDYYRDDTVMLEAFKAGEFDLREENQAKFWATSYTGRNFDQG 302
           W KDLPVN G+ N+ ++  ++YRD  V  EAFKAGEFD+  E+QAK WA  Y      +G
Sbjct: 243 WGKDLPVNRGKYNYDRMDVEFYRDSEVAFEAFKAGEFDIYIEHQAKNWANGYDFPAIKRG 302

Query: 303 LIKKEEIAHQAPASTQGFIFNTQRPVFQDVRVREALNYALDFEWMNKNLFYDQYQRTRSY 362
            I K +I HQ P  TQG   NT+R  F +V+VREAL    DFEW N+ LF   Y+RT SY
Sbjct: 303 DIIKAQIPHQIPTQTQGLFMNTRRGTFAEVKVREALGLMFDFEWTNRTLFSGAYKRTLSY 362

Query: 363 FQNTEYEAQGLPNAAELAVLTPYKEQLPARVFTETYQPSVTDGSGRIRTQMREAFALLKE 422
           + N+E+ A GLP   E  +L PY+EQLPA++ T+ +    TDG G  R  +R+A  LLK+
Sbjct: 363 YPNSEFSATGLPVGHEWLLLKPYREQLPAKLLTDPFSLPKTDGRGIPRETLRKALELLKQ 422

Query: 423 AGWELKNKVMTNVKTGEPLSFELLIYSPTTERIAIPLQKNLQLMGIEMKIRTVDTTQYTK 482
           AGW L  + + N  + +PLSFE+L+ +P  ERI  P  +NL  +GI+ ++RTVD  QY +
Sbjct: 423 AGWNLNGQRLLNADS-QPLSFEILLVNPNLERILQPYVENLASIGIQARLRTVDRAQYKQ 481

Query: 483 RLRDRDFDMISHGFSANPYPSPNLLIVWNSNY--MDSSYNSAGANHPVIDALTEQIAKSQ 540
           RL   DFDMI    S    P       ++S+   +  S N +G  +PV+D L E++  +Q
Sbjct: 482 RLDQFDFDMILLTLSQTLSPGLEQWQYFHSSQVGVKGSKNYSGIANPVVDHLLEKLLAAQ 541

Query: 541 QDTEKLRALGSALDRVLQWNFYIIPQWHLSMYRVAMWDKFSRPSVLPKYSLGLDTWWI 598
              E++ A G ALDRVL W  Y IP W+L+ +R+A  ++F+  +  P Y+LGL  WW+
Sbjct: 542 TRDEQV-AAGKALDRVLLWQHYCIPNWYLNYHRLAYRNRFAFVTT-PPYTLGLSAWWL 597