Pairwise Alignments

Query, 611 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 617 a.a., ABC transporter, periplasmic substrate-binding protein from Pseudomonas fluorescens FW300-N2E2

 Score =  482 bits (1241), Expect = e-140
 Identities = 246/561 (43%), Positives = 334/561 (59%), Gaps = 4/561 (0%)

Query: 43  KYPENFTHFDYVNPQAPKYGKVTFGELGTYDNFNRFASRGVAAANTAELYDPLMFSPADE 102
           KYP NF HFDYVNP APK G    G  G +D+ N F S+GV A +   +YD L     DE
Sbjct: 36  KYPANFKHFDYVNPDAPKGGIFRQGGFGGFDSLNPFISKGVPADDIGLIYDTLAKQGLDE 95

Query: 103 IDSYYPLIASKIRYSDDFTWLEIDLNPNARFHDGKPITAQDVEFSFEKFMAEGVPQYRVY 162
             + Y LIA KI  + D  W+   L P ARF+DG P+ A+DV FSF+    +G P +R Y
Sbjct: 96  PFTEYGLIAEKIEKAPDNGWVRFYLRPEARFNDGHPVRAEDVVFSFQTLTKDGAPMFRGY 155

Query: 163 YQDVKSVKAIAERTVRIEMKQPNREQLFSLAQSTRVLPKHYWQYKNLAEPLNEPPVGSGA 222
           Y DV  V A     V  + K  N  +L  +     VLPKH+W  ++ ++   E P+GSG 
Sbjct: 156 YNDVADVIAEDPLKVLFKFKHTNNRELPLILGQLPVLPKHWWAERDFSKGNLEIPLGSGP 215

Query: 223 YQIVDFKPGQSVTYKLNPDYWAKDLPVNVGRNNFAQIQYDYYRDDTVMLEAFKAGEFDLR 282
           Y++ + K G+S+ Y+   DYW KDLPVN G  NF  +  DYYRD+TV +EA KAG+FD  
Sbjct: 216 YKVAEVKAGRSIRYERVKDYWGKDLPVNRGFYNFDVLATDYYRDNTVAVEALKAGQFDFW 275

Query: 283 EENQAKFWATSYTGRNFDQGLIKKEEIAHQAPASTQGFIFNTQRPVFQDVRVREALNYAL 342
            E  AK WA +Y      +G + KE+I +  P   QGF++N +RP+FQDVRVR+AL+  L
Sbjct: 276 LEMTAKNWANAYNIPAVTEGRLIKEQIPNGNPTGMQGFVYNLRRPIFQDVRVRKALSLLL 335

Query: 343 DFEWMNKNLFYDQYQRTRSYFQNTEYEAQGLPNAAELAVLTPYKEQLPARVFTETYQPSV 402
           DFEW NK LF   Y RTRSYF+N+E  A GLP   EL +L P + ++P +VFT+ +QPS+
Sbjct: 336 DFEWTNKQLFNGAYARTRSYFENSEMAATGLPGEDELKILEPLRGKIPEQVFTDAFQPSM 395

Query: 403 TDGSGRIRTQMREAFALLKEAGWELKNKVMTNVKTGEPLSFELLIYSPTTERIAIPLQKN 462
            DGSG IR Q R+A+ LL+EAGW + +  M + + G+P+  E L+     ERI +P ++N
Sbjct: 396 CDGSGMIRDQQRKAYQLLQEAGWRIVDDKMVDAQ-GKPVVLEFLLAQTEFERILLPFKRN 454

Query: 463 LQLMGIEMKIRTVDTTQYTKRLRDRDFDMISHGFSANPYPSPNLLIVWNSNYMD--SSYN 520
           L  +GIE+ IR VD +Q+  R+R RDFD++   F  +  P       W S   D   S N
Sbjct: 455 LSDLGIELIIRRVDVSQFVNRVRSRDFDLVVGSFPQSSSPGNEQREFWMSAAADKPGSRN 514

Query: 521 SAGANHPVIDALTEQIAKSQQDTEKLRALGSALDRVLQWNFYIIPQWHLSMYRVAMWDKF 580
           + G   P +D L EQ+  +    + L A   ALDRVLQW +Y+IP WH+  +RVA W+  
Sbjct: 515 TMGLKDPAVDQLVEQLINA-DSRKSLVAHARALDRVLQWGYYVIPNWHIKTWRVAYWNHI 573

Query: 581 SRPSVLPKYSLGLDTWWIDQE 601
             P + P Y +G  TWW+  E
Sbjct: 574 GHPKITPTYDIGTTTWWVKPE 594