Pairwise Alignments

Query, 611 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 622 a.a., ABC transporter, periplasmic substrate-binding protein from Pseudomonas fluorescens FW300-N2E2

 Score =  399 bits (1026), Expect = e-115
 Identities = 225/574 (39%), Positives = 316/574 (55%), Gaps = 19/574 (3%)

Query: 36  LVGFGE-AKYPENFTHFDYVNPQAPKYGKVTFG--ELGTYDNFNRFASRGVAAANT-AEL 91
           L  +GE AKY E F HF Y NPQAPK G +     E+G +D+   +  +G+  +     L
Sbjct: 30  LTVYGEPAKYAEGFGHFAYTNPQAPKGGTLRRSAVEIGHFDHILPYIDKGIGVSQIDGML 89

Query: 92  YDPLMFSPADEIDSYYPLIASKIRYSDDFTWLEIDLNPNARFHDGKPITAQDVEFSFEKF 151
           Y PL     DE  + Y L+A K+  +DD   L   LNP ARF DGKPITAQDV +SFE  
Sbjct: 90  YSPLAQRSLDEPYTVYGLVAQKMERADDGLSLRFYLNPKARFADGKPITAQDVRYSFELL 149

Query: 152 MAEGVPQYRVYYQDVKSVKAIAERTVRIEMKQPNREQLFSLAQSTRVLPKHYWQYKNLAE 211
           M +G  +YR  +  VK V    ERTVR   K      L     +  V P+H+W+ ++ A 
Sbjct: 150 MTQGSLRYRTQFAAVKDVVVEDERTVRFNFKNNESRTLPLDIATLPVFPEHWWKTRDFAN 209

Query: 212 PLN-EPPVGSGAYQIVDFKPGQSVTYKLNPDYWAKDLPVNVGRNNFAQIQYDYYRDDTVM 270
               EPP+GSG Y++     G+S+T++ N D+W KDLPV+ G  NF     +Y+ D  V 
Sbjct: 210 GGGYEPPLGSGPYRVSKVDSGRSITFERNADWWGKDLPVSRGLYNFDHFSIEYFGDTDVA 269

Query: 271 LEAFKAGEFDLREENQAKFWATSYTGRNFDQGLIKKEEIAHQAPASTQGFIFNTQRPVFQ 330
            +  + G +D   E  A  +A  Y       G ++K  +A QAP + QGF+FN Q+P FQ
Sbjct: 270 RQVLRGGAYDYNREFSATGYAIGYDSPALHDGRLQKAHLATQAPQTAQGFVFNLQKPQFQ 329

Query: 331 DVRVREALNYALDFEWMNKNLFYDQYQRTRSYFQNTEYEAQGLPNAAELAVLTPYKEQLP 390
           D RVR+AL    DFEW N+ +  + Y R +SYF NT+  A+ LP+A ELA+L P + Q+P
Sbjct: 330 DRRVRQALAMLWDFEWSNRQMMRNVYVRQQSYFSNTDLAARELPDAGELAILEPLRGQIP 389

Query: 391 ARVFTETYQPSVTDGSGRIRTQMREAFALLKEAGWELKNKVMTNVKTGEPLSFELLIYSP 450
             VFT+ +Q   TDGSG IR +  +A  LL++AGW+     + N + GEPLSF  L    
Sbjct: 390 DEVFTQVFQAPKTDGSGVIRDKQLQALVLLEQAGWKPDGDRLVNAE-GEPLSFTFLNSQN 448

Query: 451 TTERIAIPLQKNLQLMGIEMKIRTVDTTQYTKRLRDRDFDMISHGFSANPYPSPNLLIVW 510
             +R+ +P ++ L  +GI+M IR +D +QY  RL  RD+DMI  G+  +  P   L    
Sbjct: 449 GIDRLLLPYKRTLAQIGIDMSIRRIDASQYVNRLMSRDYDMIITGYPVSTSPGMELY--- 505

Query: 511 NSNYMDS-SYNSAGANH------PVIDALTEQIAKSQQDTEKLRALGSALDRVLQWNFYI 563
             NY  S + N  GAN+      P +DAL + + K+    + LR    ALDRVLQWN+Y 
Sbjct: 506 --NYFGSAAANDPGANNYMALKDPAVDALIDGLVKASTQADMLRH-AHALDRVLQWNYYW 562

Query: 564 IPQWHLSMYRVAMWDKFSRPSVLPKYSLGLDTWW 597
           IP ++        W++F  P V       +++WW
Sbjct: 563 IPNYYPPGSSTVWWNRFGIPKVQASNDEAIESWW 596