Pairwise Alignments

Query, 611 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 609 a.a., ABC-type oligopeptide transport system, periplasmic component from Pseudomonas stutzeri RCH2

 Score =  440 bits (1131), Expect = e-127
 Identities = 235/587 (40%), Positives = 339/587 (57%), Gaps = 19/587 (3%)

Query: 28  AAVIETTRLVGFGEAKYPENFTHFDYVNPQAPKYGKVTFGELGTYDNFNRFASRGVAAAN 87
           A + E+     FG  KYP +FTHFD+VNP+APK G++     GT+D  N +  +G + + 
Sbjct: 19  ATISESHGYAQFGTLKYPASFTHFDWVNPRAPKGGRIKLMASGTFDTLNPYTFKGTSPSA 78

Query: 88  T--------AELYDPLM-----FSPA-DEIDSYYPLIASKIRYSDDFTWLEIDLNPNARF 133
           T        +EL +PLM     + P+ DE  S Y LIA  + YSD+ +W+  +L   ARF
Sbjct: 79  TPGFLQYGISELNEPLMVGTGIYDPSGDEPASSYGLIAESVEYSDNNSWVVFNLRKQARF 138

Query: 134 HDGKPITAQDVEFSFEKFMAEGVPQYRVYYQDVKSVKAIAERTVRIEMKQPNREQLFSLA 193
           HDGKPITA DV FS+   + +G PQYR   Q VK V  +    +R   +QP+   L    
Sbjct: 139 HDGKPITAYDVAFSYRLLVKDGHPQYRTNLQGVKRVDILNRHRIRFVFEQPDNPLLVMRL 198

Query: 194 QSTRVLPKHYWQYKNLAEPLNEPPVGSGAYQIVDFKPGQSVTYKLNPDYWAKDLPVNVGR 253
               VLP+HYW+ ++      EPP+GSG Y+I   +PG+ V ++   ++W   LPVN G+
Sbjct: 199 GELPVLPQHYWKNRDFKATTFEPPLGSGPYRITHVQPGRQVVFERVRNWWGAKLPVNQGK 258

Query: 254 NNFAQIQYDYYRDDTVMLEAFKAGEFDLREENQAKFWATSYTGRNFDQGLIKKEEIAHQA 313
            NF ++  ++YRD  V  EAFK  EFD   E+QAK WA  Y      +G I + EI HQ 
Sbjct: 259 YNFNRVDVEFYRDSVVAFEAFKVAEFDFYIEHQAKNWANGYEFPAMLRGDIIRAEIPHQI 318

Query: 314 PASTQGFIFNTQRPVFQDVRVREALNYALDFEWMNKNLFYDQYQRTRSYFQNTEYEAQGL 373
           P  TQ    N++R  F D RVREAL    DFEW N+ LFY  Y+R+ SY+ N+++ A G 
Sbjct: 319 PTQTQALFMNSRRATFADQRVREALGLMFDFEWTNRALFYGAYRRSESYYPNSDFTATGK 378

Query: 374 PNAAELAVLTPYKEQLPARVFTETYQPSVTDGSGRIRTQMREAFALLKEAGWELKNKVMT 433
           P   E  +L+PY++QLPA++FTE ++   TDG G  R  +R A  LL EAGW+  +  + 
Sbjct: 379 PEGGEWLLLSPYRKQLPAKLFTEPFELPRTDGRGIPRETLRRALGLLAEAGWKASDAGLL 438

Query: 434 NVKTGEPLSFELLIYSPTTERIAIPLQKNLQLMGIEMKIRTVDTTQYTKRLRDRDFDMIS 493
           N   G+PL FE+L+ +P  ER+  P  +NL  +GI+  +RTVD+ QY +RL   D+DMI 
Sbjct: 439 N-GAGQPLRFEILLVNPRLERVLQPYVENLARIGIQANLRTVDSAQYKQRLDHYDYDMIL 497

Query: 494 HGFSANPYPSPNLLIVWNSNYMD--SSYNSAGANHPVIDALTEQIAKSQQDTEKLRALGS 551
                +  P     + ++S+ +D     N AG  +P+ID L  ++  +Q   E++ A   
Sbjct: 498 MTLVQSLSPGIEQHLYFHSSQVDVKGGRNYAGVANPIIDDLIAKLLAAQTRDEQV-AAAR 556

Query: 552 ALDRVLQWNFYIIPQWHLSMYRVAMWDKFSRPSVLPKYSLGLDTWWI 598
           A+DRVL WN Y IP W +S +R+A  ++F+  +  P Y+LGL  WW+
Sbjct: 557 AIDRVLLWNHYTIPNWFISNHRLAYRNRFAHVTT-PPYTLGLRAWWL 602