Pairwise Alignments

Query, 611 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 628 a.a., ABC-type oligopeptide transport system, periplasmic component from Pseudomonas stutzeri RCH2

 Score =  474 bits (1220), Expect = e-138
 Identities = 242/557 (43%), Positives = 335/557 (60%), Gaps = 4/557 (0%)

Query: 43  KYPENFTHFDYVNPQAPKYGKVTFGELGTYDNFNRFASRGVAAANTAELYDPLMFSPADE 102
           KYP +F HF+YVNP APK G +     G++D+ N F ++GVAA + + +YD L  +  DE
Sbjct: 40  KYPADFQHFEYVNPDAPKGGTLRQAGFGSFDSLNPFINKGVAADDISLIYDTLTTNSLDE 99

Query: 103 IDSYYPLIASKIRYSDDFTWLEIDLNPNARFHDGKPITAQDVEFSFEKFMAEGVPQYRVY 162
             + Y L+A KI    + +W+   L P ARFHDG+P+ A+DV F+FE  M++G P YR Y
Sbjct: 100 PFTVYGLLAEKIEKGPNNSWVRFHLRPQARFHDGEPVKAEDVVFTFETLMSKGAPHYRGY 159

Query: 163 YQDVKSVKAIAERTVRIEMKQPNREQLFSLAQSTRVLPKHYWQYKNLAEPLNEPPVGSGA 222
           Y DV+ V A + R VR + K     +L  +     VLPKH+W+ ++ +    E P+GSG 
Sbjct: 160 YADVEKVVAESPRRVRFDFKHAGNRELPMILGQLPVLPKHWWEDRDFSSGSLEVPLGSGP 219

Query: 223 YQIVDFKPGQSVTYKLNPDYWAKDLPVNVGRNNFAQIQYDYYRDDTVMLEAFKAGEFDLR 282
           Y++   + G+S+ Y    DYW KDLPVN G  NF +I +DYYRD+TV L+AFKAG FD  
Sbjct: 220 YRVDKIQAGRSIRYARVEDYWGKDLPVNRGFYNFDRINFDYYRDNTVALQAFKAGHFDYW 279

Query: 283 EENQAKFWATSYTGRNFDQGLIKKEEIAHQAPASTQGFIFNTQRPVFQDVRVREALNYAL 342
            E  AK WAT+Y       G I K+EI +  P   QGFIFN +RP  +D RVREAL    
Sbjct: 280 FETSAKNWATAYDIAAVRDGRIVKDEIRNYNPTGMQGFIFNIRRPQLEDRRVREALGLLF 339

Query: 343 DFEWMNKNLFYDQYQRTRSYFQNTEYEAQGLPNAAELAVLTPYKEQLPARVFTETYQPSV 402
           D+EW N+ LF   Y RTRSYF N+E  + GLP+A EL VL P + ++P  VF + ++   
Sbjct: 340 DYEWTNRQLFNGAYTRTRSYFDNSELASSGLPDADELKVLEPLRGKIPDEVFDKAFELPH 399

Query: 403 TDGSGRIRTQMREAFALLKEAGWELKNKVMTNVKTGEPLSFELLIYSPTTERIAIPLQKN 462
           T+G+G IR Q R+A+ LL EAGW+++N  M + +  +P+  E L+     ER+ +P ++N
Sbjct: 400 TEGNGVIREQQRQAYRLLTEAGWKVENDRMLDAQ-DKPVKLEFLLVQAEFERVLLPYKRN 458

Query: 463 LQLMGIEMKIRTVDTTQYTKRLRDRDFDMISHGFSANPYPSPNLLIVWNSNYMDS--SYN 520
           L  +GIE++IR VD +QY  RLR RD+DMI  GF  +  P       W+S   D+  S N
Sbjct: 459 LADLGIELEIRRVDVSQYINRLRSRDYDMIVSGFGQSNSPGNEQREYWHSASADNPGSRN 518

Query: 521 SAGANHPVIDALTEQIAKSQQDTEKLRALGSALDRVLQWNFYIIPQWHLSMYRVAMWDKF 580
             G   P ID+L E +  +    E L     ALDR L W  Y++P WH+  +RVA W+  
Sbjct: 519 FIGLKDPAIDSLVEGLIGADSRKE-LVTHTRALDRALLWGHYVVPNWHIKTWRVAYWNHL 577

Query: 581 SRPSVLPKYSLGLDTWW 597
           + P V PK  +GL TWW
Sbjct: 578 AHPQVTPKQDIGLMTWW 594