Pairwise Alignments

Query, 611 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 619 a.a., periplasmic binding protein from Sinorhizobium meliloti 1021

 Score =  410 bits (1055), Expect = e-119
 Identities = 226/571 (39%), Positives = 327/571 (57%), Gaps = 15/571 (2%)

Query: 40  GEAKYPENFTHFDYVNPQAPKYGKVTFGELGTYDNFNRFASRGVAAANTAEL-YDPLMFS 98
           GE KY + F  FDYVNP APK G++   E GT+D+FN   ++G  A   + L ++ L+ S
Sbjct: 44  GEPKYKDGFARFDYVNPDAPKGGELRLSESGTFDSFNPILAKGEVATGVSSLVFETLLKS 103

Query: 99  PADEIDSYYPLIASKIRYSDDFTWLEIDLNPNARFHDGKPITAQDVEFSFEKFMAEGVPQ 158
             DEI + Y L+A  I Y DD +     L   A++ DGKP+T +DV FSF+  + E  P 
Sbjct: 104 AEDEITTSYGLLAEGISYPDDISSATFRLRAEAKWADGKPVTPEDVVFSFD-MVKEHNPL 162

Query: 159 YRVYYQDVKSVKAIAERTVRIEMKQPNREQLFSLAQSTRVLPKHYWQ-------YKNLAE 211
           +  YY+ V S +   ER V     + N  +L ++     +LPKH+W+        ++++ 
Sbjct: 163 FSNYYRHVISAEKTGERDVTFRFDEKNNHELPNILGQFPILPKHWWEGQDAKGSKRDISR 222

Query: 212 PLNEPPVGSGAYQIVDFKPGQSVTYKLNPDYWAKDLPVNVGRNNFAQIQYDYYRDDTVML 271
              EP +GSG Y+I  F+ G S+ ++L  DYW KDL VNVGR NF  I Y ++ D +V  
Sbjct: 223 TTLEPVMGSGPYKIASFQAGGSIRFELRDDYWGKDLNVNVGRYNFRTINYAFFSDRSVQF 282

Query: 272 EAFKAGEFDLREENQAKFWATSYTGRNFDQGLIKKEEIAH--QAPASTQGFIFNTQRPVF 329
           EAF+AG  D  ++N A  WAT+Y       G + +EEI +  +A    Q F+ N +R  F
Sbjct: 283 EAFRAGNVDFYQDNSASHWATAYDFPAMKDGRVIREEIENPLRATGIMQAFVPNMRREKF 342

Query: 330 QDVRVREALNYALDFEWMNKNLFYDQYQRTRSYFQNTEYEAQGLPNAAELAVLTPYKEQL 389
           +D RVR+ALNYA DFE +N++L ++ +QR  SYF  TE  + GLP   E  +L   K+++
Sbjct: 343 KDQRVRQALNYAFDFEDLNRSLAHNAFQRVDSYFWGTELASSGLPEGREKEILEELKDKV 402

Query: 390 PARVFTETYQPSVTDGSGRIRTQMREAFALLKEAGWELKNKVMTNVKTGEPLSFELLIYS 449
           PA VFT  Y+  V     ++R  +R+A AL KEAG+ELK   + N KTGEP SFE+L+ +
Sbjct: 403 PAAVFTTPYKNPVNGDPQKVRDNLRKALALFKEAGYELKGSRLVNAKTGEPFSFEILLSN 462

Query: 450 PTTERIAIPLQKNLQLMGIEMKIRTVDTTQYTKRLRDRDFDMISHGFSANPYPSPNLLIV 509
           PT ER   P   +++ +GI+ +IRTVD +QYT R+R  D+DMI   ++    P       
Sbjct: 463 PTFERTVTPFVNSVRKIGIDARIRTVDDSQYTNRVRSYDYDMIYGIWAQTLVPGNEQSDY 522

Query: 510 WNSNYMD--SSYNSAGANHPVIDALTEQIAKSQQDTEKLRALGSALDRVLQWNFYIIPQW 567
           W S  ++   S N AG   P ID L  +I  +  + E+L A   ALDRVL  + Y++P +
Sbjct: 523 WGSASVNQPGSRNYAGIADPAIDELIRRIVFA-PNREELVATTRALDRVLLAHHYVVPLF 581

Query: 568 HLSMYRVAMWDKFSRPSVLPKYSLGL-DTWW 597
           +    RVA W+  +RP  LP Y +   D WW
Sbjct: 582 YSKALRVAYWNHLARPKELPYYGMDFPDAWW 612