Pairwise Alignments

Query, 611 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 615 a.a., extracellular solute-binding protein, family 5 (NCBI) from Rhodospirillum rubrum S1H

 Score =  479 bits (1234), Expect = e-139
 Identities = 252/609 (41%), Positives = 347/609 (56%), Gaps = 10/609 (1%)

Query: 7   MRSWKPIALGVTLALSSQFSWAAVIETTR------LVGFGEAKYPENFTHFDYVNPQAPK 60
           MR    + L   LAL    +     ET        L  +G+ KYP +FTHFDYVNP+APK
Sbjct: 1   MRPIAAVTLAALLALPLPLATVQAAETASSGPMHALSLYGDIKYPADFTHFDYVNPEAPK 60

Query: 61  YGKVTFGELGTYDNFNRFASRGVAAANTAELYDPLMFSPADEIDSYYPLIASKIRYSDDF 120
            G +     GT+D  N +  +G AA         L    ADE  + Y L+A  +  + D 
Sbjct: 61  GGAIRLSAFGTFDTLNPYTVKGTAAFGIGLTQTTLTVPSADEPSTEYGLVAQTMELAADR 120

Query: 121 TWLEIDLNPNARFHDGKPITAQDVEFSFEKFMAEGVPQYRVYYQDVKSVKAIAERTVRIE 180
           +WL   L P AR+ DG+PITA+DV FSF+    +G P Y  YY +V  V+ +  + V+  
Sbjct: 121 SWLIFTLRPEARWSDGQPITAEDVAFSFQILKDKGQPLYNSYYSNVTGVEVLDAKRVKFT 180

Query: 181 MKQPNREQLFSLAQSTRVLPKHYWQYKNLAEPLNEPPVGSGAYQIVDFKPGQSVTYKLNP 240
                  +L S+     VLPKHYW  ++ AE   + PV +G Y+I  F+PG+ +TY+   
Sbjct: 181 FSPGENRELPSIVGQLPVLPKHYWATRDFAETTLDQPVSAGPYRIASFEPGRQITYERVK 240

Query: 241 DYWAKDLPVNVGRNNFAQIQYDYYRDDTVMLEAFKAGEFDLREENQAKFWATSYTGRNFD 300
           DYWA+ LPV+ G NNF +I+YDYYRD TV LE FKAG FD   E+ AK WAT Y      
Sbjct: 241 DYWAEALPVSKGMNNFDRIRYDYYRDVTVTLEGFKAGAFDFNSEHSAKNWATEYKFPAVS 300

Query: 301 QGLIKKEEIAHQAPASTQGFIFNTQRPVFQDVRVREALNYALDFEWMNKNLFYDQYQRTR 360
           +G +  E++  + P   QGFIFN +R  FQD RVREAL Y  DFEW N+ LFY QY RTR
Sbjct: 301 EGHVITEKVPVKGPDREQGFIFNMRRAQFQDPRVREALAYGFDFEWTNQTLFYGQYTRTR 360

Query: 361 SYFQNTEYEAQGLPNAAELAVLTPYKEQLPARVFTETYQPSVTD-GSGRIRTQMREAFAL 419
           S+F+N+E  A GLP   EL +L P + Q+P RVFTE YQP VTD   G +R  +++A  L
Sbjct: 361 SFFENSELAAVGLPGPEELKILEPLRAQIPPRVFTEEYQPPVTDEAKGGLRANLKKALDL 420

Query: 420 LKEAGWELKNKVMTNVKTGEPLSFELLIYSPTTERIAIPLQKNLQLMGIEMKIRTVDTTQ 479
           +KEAGW +          G+P +FE+L+     ER+ +P+ KN + +GI   +RTVDT Q
Sbjct: 421 MKEAGWTVNAAGKMVNAAGQPFTFEILLRQADVERMVLPMVKNFERLGITATVRTVDTPQ 480

Query: 480 YTKRLRDRDFDMISHGFSANPYPSPNLLIVWNSNYMD--SSYNSAGANHPVIDALTEQIA 537
           +  R++  DFDM+S  ++ +  P      +W+S   D   + N AG   P +D+L E + 
Sbjct: 481 FISRVQSFDFDMVSAVWAQSNSPGNEQRDLWSSTAADIPGTSNLAGLKSPAVDSLIESVI 540

Query: 538 KSQQDTEKLRALGSALDRVLQWNFYIIPQWHLSMYRVAMWDKFSRPSVLPKYSLGLDTWW 597
            +    + L A   ALDRVLQW+F  IP ++ +  R+A W+ F RP+V P   +    WW
Sbjct: 541 AAPTRAD-LIARTRALDRVLQWSFPWIPHYYGAFERIAYWNVFGRPAVTPNRGVVFQAWW 599

Query: 598 IDQEKAARL 606
            D EKAA++
Sbjct: 600 FDAEKAAKV 608