Pairwise Alignments

Query, 611 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 639 a.a., ABC transporter, periplasmic substrate-binding protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  391 bits (1004), Expect = e-113
 Identities = 217/568 (38%), Positives = 305/568 (53%), Gaps = 8/568 (1%)

Query: 48  FTHFDYVNPQAPKYGKVTFGELGTYDNFNRFASRGVAAANTAELYDPLMFSPADEIDSYY 107
           F H  +VNP+APK G +  G +G +D+ + F  RG+ AA     Y+ L  +   E    Y
Sbjct: 53  FAHMPHVNPEAPKGGTLRLGVIGGFDSLHPFIMRGIPAAQLGLTYETLGETVPGEDGVIY 112

Query: 108 PLIASKIRYSDDFTWLEIDLNPNARFHDGKPITAQDVEFSFEKFMAEGVPQYRVYYQDVK 167
            L+A     S D   L   L P ARF DG P+TA DV FSFE     G P YR YY  V 
Sbjct: 113 GLLAESFEESADGGHLVCHLAPAARFADGHPVTAADVVFSFEMLTRHGSPFYRDYYAGVG 172

Query: 168 SVKAIAERTVRIEMKQPNREQLFSLAQSTRVLPKHYWQYKNLAEPLNEPPVGSGAYQIVD 227
           +V A+  RTVR +    +  +L  +     VLP+H+WQ ++   P  E   GSG Y++ +
Sbjct: 173 TVTAVDARTVRFDFTSRHNAELPYIVAQLPVLPRHWWQGRDFTAPQAEAAPGSGPYRVRE 232

Query: 228 FKPGQSVTYKLNPDYWAKDLPVNVGRNNFAQIQYDYYRDDTVMLEAFKAGEFDLREENQA 287
            +PG  +TY+  P +W   LP+N GR NF  I+ DYYRD TV  +AF AGEFDL  EN  
Sbjct: 233 ARPGSGITYERVPGWWGAKLPINRGRYNFDVIRCDYYRDTTVARQAFLAGEFDLWNENTI 292

Query: 288 KFWATSYTGRNFDQGLIKKEEIAHQAPASTQGFIFNTQRPVFQDVRVREALNYALDFEWM 347
           K W  SY   +  +G I +EEI H  P    GF+FNT+R +F DVRVR AL    DFEW 
Sbjct: 293 KDWFASYDVPSVREGRITREEIPHGRPEGMGGFVFNTRRAIFADVRVRRALAMCFDFEWT 352

Query: 348 NKNLFYDQYQRTRSYFQNTEYEAQGLPNAAELAVLTPYKEQLPARVFTETYQPSVTDGSG 407
           N+ LF+D Y+R  S+F N+ + A G     E A+L     +  A +      P+  DGSG
Sbjct: 353 NRALFHDAYRRYDSFFSNSPFAATGTATEGERALLREVSPERAAMLSGPPPLPATHDGSG 412

Query: 408 RIRTQMREAFALLKEAGWELKNKVMTNVKTGEPLSFELLIYSPTTERIAIPLQKNLQLMG 467
            IR  +R+A  L+ +AGW L++  + +  +G P  F LL+ S   ER+ +P ++NL  +G
Sbjct: 413 DIRPVLRDALRLMHDAGWNLRDGRLVDA-SGRPFRFTLLLSSKGLERVVLPFRRNLSRLG 471

Query: 468 IEMKIRTVDTTQYTKRLRDRDFDMISHGFSANPYPSPNLLIVWNSNYMDS--SYNSAGAN 525
           +EM ++ VD TQY  R+R  D+DM+      +  P       W +   D+  S N AG  
Sbjct: 472 VEMDVQVVDQTQYVSRVRAFDYDMVHATMRQSSNPGNEQRAFWTTAAADAPGSRNYAGVR 531

Query: 526 HPVIDALTEQIAKSQQDTEKLRALGSALDRVLQWNFYIIPQWHLSMYRVAMW-DKFSRPS 584
              +DAL E+I  + +D   LR    ALDRVL    Y++P W+    R+A W  + + P+
Sbjct: 532 DTAVDALVERII-AARDAATLRDAVHALDRVLLHEHYVVPGWYSDRQRMAYWKTRVAHPA 590

Query: 585 VLPKYSLGLDTWWI---DQEKAARLPEK 609
             P+  + L +WW    D  +A  +P K
Sbjct: 591 FTPRGGIDLHSWWAVSGDDTQAKGVPAK 618